RNA id: TU1713897



Basic Information


Item Value
RNA id TU1713897
length 286
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1499180
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84772884 ~ 84773169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttatactttgacttttaatacttaagtatattttagcaattccatttactctTGATACTAAAGTATAATTAAAACCAAATGTTatactaaagtatatttaaaaccaaatgctttcagacttttaatcaagtagtattttactgggtgacttttactgaAGTCgtgttctattaaggtatctttacttttactcaagtatgacaatttagtcgTTTTTCCACGCTGGTCAgccagcatgcttcagttcggctgatGGCTAGCCGAAGTCGGTTAGCGAACCGAACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1713894 lncRNA upstream 2905 84769648 ~ 84769979 (+) True G1499177
TU1713886 lncRNA upstream 34697 84737312 ~ 84738187 (+) True G1499169
TU1713872 lncRNA upstream 41200 84731309 ~ 84731684 (+) True G1499164
TU1713852 lncRNA upstream 49079 84723532 ~ 84723805 (+) True G1499161
TU1713835 lncRNA upstream 60468 84712130 ~ 84712416 (+) True G1499146
TU1713916 lncRNA downstream 54037 84827206 ~ 84836536 (+) True G1499197
TU1713940 lncRNA downstream 119564 84892733 ~ 84892972 (+) True G1499215
TU1713952 lncRNA downstream 141773 84914942 ~ 84916728 (+) True G1499225
TU1713969 lncRNA downstream 184487 84957656 ~ 84958022 (+) True G1499238
TU1713990 lncRNA downstream 228518 85001687 ~ 85001910 (+) True G1499257
XM_036950813.1 mRNA upstream 6944 84732235 ~ 84765940 (+) False LOC110494762
XM_036950823.1 mRNA downstream 16005 84789174 ~ 84793175 (+) False LOC110493283
XM_021567536.2 mRNA downstream 16760 84789929 ~ 84793175 (+) False LOC110493283
XM_021570094.2 mRNA downstream 24019 84797188 ~ 84798988 (+) True si:dkey-33m11.6
XM_021570095.2 mRNA downstream 67348 84840517 ~ 84848351 (+) True ddx19
XM_021570096.2 mRNA downstream 80156 84853325 ~ 84857469 (+) True LOC110494765
TU1713482 other upstream 87501 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 207277 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 218655 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 255704 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 275486 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 15963 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 37362 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 441624 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 495957 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 495957 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile