RNA id: TU1714293


Basic Information

Item Value
RNA id TU1714293
length 1927
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G1499494
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84791186 ~ 84857468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTATAATGGAGAattttaataatataatacaaaTGGTTCACAATATCACACTGAATACATTGCTAAAATTGCTGAGGCACAAAATAATTAACAAATAGAACATTATACTCCCCTTTTAAATACAGCTTTTAAAAATGTGCATATGATCTCAATCAAGTTTGGGAAATCTGGTAGTCTACATTACAACATTGACAGAATTTGTTATCTATATTTGTCAGACAGATTCTTCCGTGATCTATTCAGTTTCATAAAACACATCAAATAGGCCTACATCAGTATACAAATGCAGACAATTGACACTGCATTGCCGCTCTCTATTACCACACTGAACATTTCATTAAACAGGCAATTATCCTGATATCTCCTTTGGACACTATGACTCAAATACTAGAGTAGGGCCAGAAGTTTTCCCTGACCTCATGACCTGACctggaaaaactctgggcccttgTTATAAACTATCAGGAAAAACTCTTGTTGAAGCTTCCAGAAACTTCCAGCCTTGCTGCTCAGAACCGAGAAGACAGTGACAATATGATTATTCCACACAACATATGATGCCACATCTACTCAGCTATAGTCTCAATGGTTTCAATAGTCTCTGTCACAGTCTCCATCGTCGTAACTTCCGTACTCTGAACTCTCGTTGCAGCCGGTGAAGCCGACTCTTCCTCAGCCACCTCCTCGGGCCCCCAACCCTCCTCGTCAGCCTTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCATTCAGATTGTTCTCTGCCTCTGTGAACTCCATCTCGTCCATGCCCTCGCCAGTGTACCAGTGCAGGAAGGCCTTGCGCCTGAACATGAGCGAGAACTGGTCTCCTACGCGACGGAAGATCTCCTGAATGGCCGTGTTGTTGCCAATGAAGGTGGAAGCCATTGTGAGCCCCCGAGGTGGGATGTCACATACGGATACTTTACAGTTGTGAGGGATCCAGTCCACAAAGTAGTTGCTGTTCCTCTGTTGCATCATCAGCATCTGCTCGTCCACTTCCTTGGTGGACATCTTGCCACGGAACATCCCAGCCACGGTCAGATAGCGCCCTCTTCGGGGATCGCAGGCGGTCATCATATTACGGGCATCAAACATCTGCTGGGTGAGCTCGGGCACGGAGAGAGTGCGGTACTTCTGGCTGCCGCGAGCTGTGAGAGGTGCAAAGCCCGACATGAAGAAGTGGAGGCGGGGAAAGGGCACCATGTTGACAGCTAACTTCCTCAGATCGGCGTTGAGCTGGCCTGGGAACCTCAGGGAGGTCGTGACTCCGCTCATGGTCATGCACACCAGGTGGTTCAGGTCACCGTAGGTCGGGTTGGTGAGCTTCAACGTACGGAAGCAGATGTCATAGAGAGCCTCGTTGTCGATGCAGAAGGTCTCATCCGTGTTCTCTAGGAGCTGGTGGATGGACAGCGTGGCATTGTAGGGCTCCACCACGACGTCTGACACCTTGGGCGAGGGCAGGACACTGAAGCTGGTCATGATGCGATCGGGGTACTCCTCACGGATCTTGTTGATGATGAGGGTGCCCATGCCGGACCCCGTCCCGCCACCTAGGGAGTGGACGAACTGGAAGCCCTGAAGGCAGTCGCATCCCTCGCTCTCCTGACGCACCCTGTCAATCACGGTGTCCACAAGCTCTGCTCCCTCTGTGTAGTGGCCCTTGGCCCAGTTGTTCCCAGCACCAGAGTTTCCACCATTTGCCTCGTTGAAGTAGACGTTGAGCCTCTCCAGCTGAAGAGGATCATCCCCCTCATACATTCCTGTAGCACTGATTCCATGCTCCTCGCTGATCACCTCCCAAACTTAGAGCCTATCTGATTTCCACACTGTCCAATCTGTAGATGTACAATTTCACGCATGATGAGCGAGCTAGAGACTGCTAACACACAAGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714280 lncRNA downstream 7735 84844442 ~ 84845629 (-) True G1499482
TU1714285 lncRNA downstream 82724 84770334 ~ 84770640 (-) True G1499487
TU1714268 lncRNA downstream 98217 84754782 ~ 84755147 (-) True G1499472
TU1714266 lncRNA downstream 99106 84752084 ~ 84754258 (-) True G1499470
TU1714248 lncRNA downstream 121680 84731319 ~ 84731684 (-) True G1499457
TU1714327 lncRNA upstream 13669 84871137 ~ 84871358 (-) True G1499517
TU1714328 lncRNA upstream 21250 84878718 ~ 84879253 (-) True G1499518
TU1714333 lncRNA upstream 22222 84879690 ~ 84879956 (-) True G1499523
TU1714367 lncRNA upstream 100017 84957485 ~ 84957874 (-) True G1499550
TU1714383 lncRNA upstream 132980 84990448 ~ 84992243 (-) True G1499566
XM_021570090.2 mRNA downstream 122635 84726510 ~ 84730729 (-) False LOC110494760
XM_036948440.1 mRNA downstream 139967 84690785 ~ 84713397 (-) True LOC110493281
XM_021570084.2 mRNA downstream 806826 84032365 ~ 84046538 (-) True LOC110494754
XM_036950802.1 mRNA downstream 806869 84032365 ~ 84046495 (-) False LOC110494754
XM_036950803.1 mRNA downstream 807304 84032365 ~ 84046060 (-) False LOC110494754
XM_021570099.2 mRNA upstream 24520 84881988 ~ 84887491 (-) True slc32a1
XM_036950825.1 mRNA upstream 93052 84950520 ~ 84974232 (-) False LOC110494769
XM_036950826.1 mRNA upstream 93052 84950520 ~ 84979671 (-) False LOC110494769
XM_036950827.1 mRNA upstream 93052 84950520 ~ 84995003 (-) True LOC110494769
XR_005037092.1 mRNA upstream 333329 85190797 ~ 85204675 (-) True LOC118940503
TU1713103 other downstream 795972 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 870470 83982341 ~ 83982894 (-) True G1498442
TU1712523 other downstream 1247611 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 2191726 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 2607377 82235128 ~ 82245987 (-) False G1496689
TU1714505 other upstream 363657 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 429188 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 429188 85286656 ~ 85288117 (-) True G1499684
TU1715872 other upstream 1382250 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 1592211 86449679 ~ 86450734 (-) True G1500834

Expression Profile