RNA id: TU1714005


Basic Information

Item Value
RNA id TU1714005
length 1732
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1499263
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85029949 ~ 85033529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctttatgtagtgttgtctctctttatgtagtgttgtggagtctctctctatgtagtgttgtggtgtctctctttatgtagtgttgtggtgtctctcttcatgtagtgttgtagtgtctctctttatgtagtgttgtgttgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtctctctttatgtagtgttgtctctctttatgtagtgttgtggtgtatctttatgtagtgttgtggtgtctctctttatgtagtgttgtggggtctctctttatgtagtattgtgttgtctctctttatgtagtgttgttgtgtctctctttatgtagtgttgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtctctctttatgtagtgttgtggtgtctctttatgtagtgttgtggggtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtagtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtggagtctctatttatgtagtgttgtggtgtctctctttatgtggtgtctctctttatgtagtgtcgtggtgcctctctttatgtagtgttgtgatgtctctctttatgtagtgttgtggagtctctatttatgtagtgttgtggtgtctctctttatgtagtgtcgtggtgtctctctttatgtagtgttgtagtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtggagtctctatttatgtagtgttgtggtgtctctctttatgtagtgtcgtggtgtctctctttatgtagtgttgtagtgtctctctttatgtagtgttgtagtgtctctctttatgtagtgttgtagtgtctctctttatgtagagttgtggtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtggtgtctctctttatgtagtgttgtgtgttttgtcctacatttgtatttttaatcccagctcccgtccctgcaggaggcctctTGCCCCTTGgtaggcgtcattgtaaataagtatttgttcttaactggcttgcctagtCATATTGTATTACATCCTAGATACCAACCTCCCCTGGATTTCCTAGATACCAACCTCCCCTGTTTCTCCTAGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGTTCTCCTGGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGTTCTCCTGGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTGGTTACCAACCTCCCCTGGATCTCCTGGTTACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGATCTCCTGGTTACCAACCTCCCCTGGATTTCCTGGTTACCAACCTCCCCTGGCTCTCCTAGATACCAACCTCCCCTGGATCTCCTTGATACCAACCTCCCCTGGATCTCCTTGATACCAACCTCCCCTGGATCTCCTAGATACCAACCTCCCCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714010 lncRNA upstream 2849 85025371 ~ 85028920 (+) True G1499266
TU1713991 lncRNA upstream 29268 85002173 ~ 85002501 (+) True G1499258
TU1713990 lncRNA upstream 29859 85001687 ~ 85001910 (+) True G1499257
TU1713969 lncRNA upstream 73747 84957656 ~ 84958022 (+) True G1499238
TU1713952 lncRNA upstream 115041 84914942 ~ 84916728 (+) True G1499225
TU1714022 lncRNA downstream 14538 85048067 ~ 85049150 (+) True G1499276
TU1714080 lncRNA downstream 115926 85149455 ~ 85150848 (+) True G1499331
TU1714094 lncRNA downstream 162370 85195899 ~ 85198181 (+) True G1499344
TU1714101 lncRNA downstream 182605 85216134 ~ 85216364 (+) True G1499348
TU1713848 lncRNA downstream 187586 85221115 ~ 85221484 (+) True G1499157
XR_005037091.1 mRNA upstream 81027 84948345 ~ 84950742 (+) True LOC118940501
XM_021570098.2 mRNA upstream 152509 84871814 ~ 84879260 (+) True aurka
XM_021570097.2 mRNA upstream 162387 84858685 ~ 84869382 (+) False LOC110494766
XM_036950824.1 mRNA upstream 162387 84859219 ~ 84869382 (+) True LOC110494766
XM_021570096.2 mRNA upstream 174300 84853325 ~ 84857469 (+) True LOC110494765
XM_036950828.1 mRNA downstream 8644 85042173 ~ 85212327 (+) False LOC118940502
XM_036950829.1 mRNA downstream 8644 85042173 ~ 85212327 (+) True LOC118940502
XM_021570101.2 mRNA downstream 196162 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA downstream 196541 85230070 ~ 85241799 (+) False fam210b
XM_036950832.1 mRNA downstream 197253 85230782 ~ 85241799 (+) True fam210b
TU1713850 other upstream 220584 84810531 ~ 84811185 (+) True G1499159
TU1713884 other upstream 239269 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 346386 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 466162 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 477540 84527765 ~ 84554229 (+) False G1498912
TU1714100 other downstream 181264 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 235597 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 235597 85269126 ~ 85287417 (+) False LOC110494772
TU1714112 other downstream 235597 85269126 ~ 85288116 (+) False LOC110494772
TU1714113 other downstream 235597 85269126 ~ 85288116 (+) False LOC110494772

Expression Profile