RNA id: TU1714507


Basic Information

Item Value
RNA id TU1714507
length 1152
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1499673
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85228554 ~ 85229705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAAAGTCAGTCTGTCTTTCTTTCACAGGAAGTGGATGCGTGCATGGTTAAACCACATGACAAACAAGTCTTAAACGTAACTTTCTCACCTAGCTAGCTCTTAGATTCTGATTTGAATACCACTATGCTCTCTTTTACAACCCCGTTGTAGCAATCTGCCTCGGGAATTTACACAGTTAGTGTGAGAGCTGGCAAGCAACCATTCAAAACAACCTATTGCTAGGGTTACAACAGTACTCCATAACTCCTTACTACCATCCCCATTAAACATTAACCAGGCAGGGGAGTTATTTGATCCTGGTGAAGTCTGGAGCATCATTTAATGTCTATCTATAAAATTAAAATGACCTAGGAAATATATATCTGTTTGACgtgttttaaaataaaaaaaatacaaatttttATAGTagaacccaacacacacacacacgggaaactgttgatctaaaaaaaaacagcaacgttgcagttcttgacacactcaaaccagtgggcctggcaactactaccataccctagtcaaaggcacttaaatatgttgtcttgcccattcaccctctgaatggcacatatacacaatacatgtctcaattgtctcaaggtttaaaaatccttcttaaacctgtctcctccccttcatctacactaattgaagtgaATTTaccaggtgacatcaataagggatcatagcgttcacctggtcagtctgtcatggaacgACCAGAGCAAATAAAATCTTACTGCTGAAACAACATTACATAGTCTCAACCATATTCCcacttcttgtttttttaaattatgttatAGAGCATGAAAATAGGATGTTACCCAATACGTGAAAGGCCACAGTCAGTCAATCCCCACAACGTGCAGTCTCCGCAAACAACTCGCAAACAACTCACAAACAACTCCGTAAACAACTCACAAACAACTCACAAACAACTCACAAACAACTCCGCAAACAACTCACAAACAACTCACAAACAACTCACAAACAACTCCGCAAACAACTCACAAACAACTCCGCAAACAACTCACAAACAACTCACAAACAACTCACAAACAACTGTGCAAACATCTCACAAAAAACTCCGCAAACAACTCACAAACAACTCCGTAAACAACTCACAAACAACTCACAAACAACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714500 lncRNA downstream 1274 85226106 ~ 85227280 (-) True G1499669
TU1714506 lncRNA downstream 4489 85223585 ~ 85224065 (-) True G1499672
TU1714517 lncRNA downstream 10783 85217309 ~ 85217771 (-) True G1499682
TU1714516 lncRNA downstream 11320 85216600 ~ 85217234 (-) True G1499681
TU1714487 lncRNA downstream 58822 85169174 ~ 85169732 (-) True G1499661
TU1714497 lncRNA upstream 10175 85239880 ~ 85241797 (-) False G1499667
TU1714496 lncRNA upstream 10276 85239981 ~ 85241797 (-) True G1499667
TU1714521 lncRNA upstream 22083 85251788 ~ 85288117 (-) False G1499684
TU1714572 lncRNA upstream 24230 85253935 ~ 85254752 (-) True G1499696
TU1714593 lncRNA upstream 52146 85281851 ~ 85282763 (-) True G1499711
XR_005037092.1 mRNA downstream 23879 85190797 ~ 85204675 (-) True LOC118940503
XM_036950827.1 mRNA downstream 233551 84950520 ~ 84995003 (-) True LOC110494769
XM_036950826.1 mRNA downstream 248883 84950520 ~ 84979671 (-) False LOC110494769
XM_036950825.1 mRNA downstream 254322 84950520 ~ 84974232 (-) False LOC110494769
XM_021570099.2 mRNA downstream 341063 84881988 ~ 84887491 (-) True slc32a1
XM_036950836.1 mRNA upstream 70601 85300306 ~ 85314959 (-) False shmt2
XM_036950834.1 mRNA upstream 70601 85300306 ~ 85342666 (-) False shmt2
XM_036950835.1 mRNA upstream 70601 85300306 ~ 85342666 (-) True shmt2
XR_005037097.1 mRNA upstream 86640 85316345 ~ 85318853 (-) True LOC110487407
XR_005037095.1 mRNA upstream 95448 85325153 ~ 85326711 (-) False LOC118940505
TU1714505 other downstream 5435 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1171162 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1245660 83982341 ~ 83982894 (-) True G1498442
TU1712523 other downstream 1622801 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 2566916 82654472 ~ 82661638 (-) True G1496921
TU1714519 other upstream 56951 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 56951 85286656 ~ 85288117 (-) True G1499684
TU1715872 other upstream 1010013 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 1219974 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 1568360 86798065 ~ 86806531 (-) False LOC110493290

Expression Profile