RNA id: TU1714497


Basic Information

Item Value
RNA id TU1714497
length 1804
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G1499667
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85239880 ~ 85241797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGGATTCATTCTTTATTCTTTCATATTTCCTTCCAATAATTCACAGAAAGACATGGCACGTATTTCTTTGTGAACTAACGGGTCAACAAAATCACCATGGACCATGGCTTCTGTTTAGCAAAAACTTAAAGGTCAAAAAAATAAACCAACGGAAACTGCAGAGCCTTGAAACAGACATCGTGAGGTCTAACTACTGAACCTTCAtatagaaaataaaaatgtataggAACATTTACGGGTGGGTTAAAAGTGGGCCTCGTGGGTCATCTAGGAGTTTCCAAATTCAGAAACACATCACAAAGAGTCCCTGTTTGTTCTCCTGTAGAAATCACCGTTGAAGAATTCCAAGTTAGATGGACTCCTCAAAGATGAATCCTTCCTGATTCTAGAAATCCTACAAAAGCCATATCTGaaaaaacagggaatatttataaGGTTATTCAAGGTCTTAGAGGTGGTGGTGCCTGCCAATCAGGCTGTGGGTGAGGTGGTGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCAAATCAGGCTGTGGGTGAGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGGTGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGGTGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGGTGGTGTCTGCCAATCAGGCTGTGGGTGAGGTGGTGGTGTCTGCCAATCAGGGTGTGGGTGAGTTGGGGGTCTTGAAGAGGCCAGTCTTTCTGAGGTACCGAACGAGAAGAGGCACCGACACCAGAGTAATGCTGATTCGGAGAGGAGCGAAGAGCTTGTGGACGGCGTACGCCAAGACAAATGTACTGGTCCCTGCCGCCAACTTGGACTGAAGCAGAGATTCACTAAAACCTATCTTGTACAGGATGGCAGCCATGTCAATCCCACTgtggagaggacacacacacacgttattggAGAGAAGTACAACAGGGATCATCTCATTTTCATCATTATTTTATGATGTGAAGCACTTTGTTAATTGAAGAGTGCTATACAAAAAAAGTTAACTGTCATTAAATTAAAAACATCCATAAAACGATTTATTCAGCCCATTAGAAGGCCTCTCTATACACTTTCATTTAACATGGTGACATCTGAAACGCattcctattccctacatggtgcactgCAATGCACTAACACATCACTATAGGATGACATTTCAGAATGCATGTCTCTCCCCACGGTGATTATCTGGGTTGATAGTGAACTGGAGCGCTATGCTGGCCGGGAGGGTGTTGAGTCCAAGGGCCATATTACTGCTGTCAGGGGAAATCTGTGAGCTGGTTGATAATCTAGGCTCTATCCTCCTGGTATGCAGCCTACTGGGCACAGCTGGCAGAGAGCCAGCAGAGAGCCGGCAGAGAGCCGGCAGGCAGTCAGAGATAGGACACATAACCGGGCCATGGGCCCACGGCTACAGACAGACTAACAACGGATTTTCCTACATTACACCATCAGGAGAAGGCCTTCTCTCTATAGTCATTACACCATCAGTAGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714507 lncRNA downstream 10175 85228554 ~ 85229705 (-) True G1499673
TU1714500 lncRNA downstream 12600 85226106 ~ 85227280 (-) True G1499669
TU1714506 lncRNA downstream 15815 85223585 ~ 85224065 (-) True G1499672
TU1714517 lncRNA downstream 22109 85217309 ~ 85217771 (-) True G1499682
TU1714516 lncRNA downstream 22646 85216600 ~ 85217234 (-) True G1499681
TU1714521 lncRNA upstream 9991 85251788 ~ 85288117 (-) False G1499684
TU1714572 lncRNA upstream 12138 85253935 ~ 85254752 (-) True G1499696
TU1714593 lncRNA upstream 40054 85281851 ~ 85282763 (-) True G1499711
TU1714606 lncRNA upstream 101771 85343568 ~ 85376275 (-) True G1499721
TU1714623 lncRNA upstream 154121 85395918 ~ 85397768 (-) True G1499737
XR_005037092.1 mRNA downstream 35205 85190797 ~ 85204675 (-) True LOC118940503
XM_036950827.1 mRNA downstream 244877 84950520 ~ 84995003 (-) True LOC110494769
XM_036950826.1 mRNA downstream 260209 84950520 ~ 84979671 (-) False LOC110494769
XM_036950825.1 mRNA downstream 265648 84950520 ~ 84974232 (-) False LOC110494769
XM_021570099.2 mRNA downstream 352389 84881988 ~ 84887491 (-) True slc32a1
XM_036950836.1 mRNA upstream 58509 85300306 ~ 85314959 (-) False shmt2
XM_036950834.1 mRNA upstream 58509 85300306 ~ 85342666 (-) False shmt2
XM_036950835.1 mRNA upstream 58509 85300306 ~ 85342666 (-) True shmt2
XR_005037097.1 mRNA upstream 74548 85316345 ~ 85318853 (-) True LOC110487407
XR_005037095.1 mRNA upstream 83356 85325153 ~ 85326711 (-) False LOC118940505
TU1714505 other downstream 16761 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1182488 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1256986 83982341 ~ 83982894 (-) True G1498442
TU1712523 other downstream 1634127 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 2578242 82654472 ~ 82661638 (-) True G1496921
TU1714519 other upstream 44859 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 44859 85286656 ~ 85288117 (-) True G1499684
TU1715872 other upstream 997921 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 1207882 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 1556268 86798065 ~ 86806531 (-) False LOC110493290

Expression Profile