RNA id: TU1714146


Basic Information

Item Value
RNA id TU1714146
length 2056
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G1499375
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85298567 ~ 85301108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttaaccAGTGTTGGAAAAGAAATAATTCTTTAATTCTGTAAAGttaaaatgcatacaaaatcCTTTCTTCTTTGTCAACACTTAGAAAGCCAGCACTGGCATGAAACCACTGTTTATTGTATTGTCATTTTGGACCGTTATCAGTCTAACAATATATGCAGCAGGTTGTTGGATCATACACTACCgagctggcctggttacgcaTCCACCATCGTTGCTAGAACCATGCTGAAAAGGACCATGGGAAAATATATGATAGGATAGTGGGATAGGTAGGATAGTGAAGGCCTGGTCTGATATCTGGTTTGATATCTGTAGGATAGTGAAGGTCTGGTCTGATATCTGGTTTGATATCTGTAGGATAGTGAAGGCCTGGTCTGAGATCTGGTTTGATATCTGTAGGATAGTGAAGGCCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGGCCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGCCCTGGTCTGAGATCTGGTTTGATATCTGTAGGATAGTGAAGCCCTGGTTTGATATCTGTAGGATAGTGAAGGTCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGGTCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGGCCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGCCCTGGTCTGAGATCTGGTTTGATATCTGTAGGATAGTGAAGGTCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGGTCTGGTCTGAGATCTGGTCTGATATCTGTAGGATAGTGAAGGCCTGGTCTGATATCTGTAGGATAGTGAAGCCCTGGTCTGAGATCTGGTTTGATATCTGTAGGATAGTGAAGGTCTGGTCTGAGATCTGGTTTGATATCTGTATTAAGGTATAACAGGGGAACGGTCTTGTTATGGAGTTCACCAGTCAACCCACTGACCTCTGGCTTGGGACCCCTTGACTTCTGATGAGACTTGGGTTCAAGTTAAAAATAGATTTTACATATACCTTTATCTGAGCTCGATTGAGCTTGCCTGACATCATGGAACGATAGGTTCACTTAATTTTTGAGATGATTCAATCTGGCACTCTAGGCCAAGCTAGAGCAAACAGAACAAATAACGGAACGATTTCGAATAGGATTTGAGGCCCAGAGTTACTTCAGAGGAGTTTGAATGGAgttggttacacacacacacacttacaacagTATAGGGTTGTATGACAGACGTGTATTAATCAAATCTCCATCATGAACATCTAGTCATCAAGTCGATCAATTAAGACAATGTGTTCATTTATAGTTTAAGACTCTGTGCTTCTAATAAAAATGTACCTTTGTGGTGACAGTAAGTTTAGATGACATTTCTCTCAGGGTCTGACGTTGAGCTCTTTCTCCTACACTGCAACCTTAAAACATGCAGAAAATAAACACTTAGAAAATAaggatgtttttgtttgtgtaAACATACAAAGGGGGTTAGAAGCTACAGAATTACCCTCACGTTAGGTCAGAGGTCAACAGATGACATCAAACCATCTGTTTGGATAAGTCTGCGAGGTTACGCCTGGTCTGACTCCAATCACTGACCACCACCAAGTTCCCAAAGTCCATAATAGCCTACCACTTCAAAATCACCTCCAAATACATTTCTGCTTCCTTCTAAGTAGTACGCTAGTGTTGGATATTGGAATGGAAATGCTTGACTGACTCTCCctgctctctcgcgctctctctctctctctctgtgtgtggagggcCTAGTGATCCTCGAAGCCGAGGGCCTAGTGATCCTCGAAGCCGGGCATGGGGAAGGGCCGTGCGAAGGCCTCCACTCGTTTCTTCAGCTCTGCCATGCGAGAGACCGTCTCTGGATCCTCCAACAAGAAGTTCTTAAAGTCTGCAAGTTTCCCTGGAGAGAAGAAGACAGTAGAGCAGATGTTTTCAGCTTTTGTGTCACTTCCTGTATTTTCACACCAATGGCTTGCGTTTTCCTCGACTGAGTCACTCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714128 lncRNA upstream 25841 85271921 ~ 85272726 (+) True G1499366
TU1713846 lncRNA upstream 53781 85242663 ~ 85244786 (+) True G1499155
TU1713847 lncRNA upstream 72867 85223513 ~ 85225700 (+) True G1499156
TU1713848 lncRNA upstream 77083 85221115 ~ 85221484 (+) True G1499157
TU1714101 lncRNA upstream 82203 85216134 ~ 85216364 (+) True G1499348
TU1714158 lncRNA downstream 26039 85327147 ~ 85362000 (+) True LOC118940506
TU1714192 lncRNA downstream 101911 85403019 ~ 85403370 (+) True G1499413
TU1714650 lncRNA downstream 162359 85463467 ~ 85463670 (+) True G1499763
TU1714684 lncRNA downstream 184326 85485434 ~ 85485641 (+) True G1499795
TU1714717 lncRNA downstream 210710 85511818 ~ 85512828 (+) True G1499828
XM_036950833.1 mRNA upstream 10456 85269122 ~ 85288111 (+) False LOC110494772
XM_021570101.2 mRNA upstream 56768 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA upstream 56768 85230070 ~ 85241799 (+) False fam210b
XM_036950832.1 mRNA upstream 56768 85230782 ~ 85241799 (+) True fam210b
XM_036950829.1 mRNA upstream 86240 85042173 ~ 85212327 (+) True LOC118940502
XR_005037093.1 mRNA downstream 18295 85319403 ~ 85320964 (+) False LOC118940504
XR_005037094.1 mRNA downstream 18296 85319404 ~ 85320964 (+) True LOC118940504
XR_005037098.1 mRNA downstream 26154 85327262 ~ 85329770 (+) False LOC118940506
XM_036950838.1 mRNA downstream 429434 85730542 ~ 85821738 (+) False LOC110493284
XM_036950840.1 mRNA downstream 429434 85730542 ~ 85821738 (+) False LOC110493284
TU1714136 other upstream 5446 85291785 ~ 85293121 (+) True G1499374
TU1714116 other upstream 10451 85269126 ~ 85288116 (+) False LOC110494772
TU1714823 other downstream 324335 85625443 ~ 85711859 (+) False G1499923
TU1715184 other downstream 966220 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 1081190 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 1219722 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 1867431 87168539 ~ 87169007 (+) True G1501148

Expression Profile