RNA id: TU1714684


Basic Information

Item Value
RNA id TU1714684
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1499795
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85485434 ~ 85485641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcttcgtctgtttgcaatcccaatgctcattgttacacaatgaattatcttttgtttgataaaatccgtttttatagcctaacacgaaacattttgtgaaccgcttgtgtcgtgaattccgtctcattccattttcgacgacacattcgagTGTAAATACCCACACAGaccgtgacttttccagtcatgtttggtttcattgcaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714650 lncRNA upstream 21764 85463467 ~ 85463670 (+) True G1499763
TU1714192 lncRNA upstream 82064 85403019 ~ 85403370 (+) True G1499413
TU1714158 lncRNA upstream 123434 85327147 ~ 85362000 (+) True LOC118940506
TU1714145 lncRNA upstream 184326 85298567 ~ 85301108 (+) False G1499375
TU1714717 lncRNA downstream 26177 85511818 ~ 85512828 (+) True G1499828
TU1714740 lncRNA downstream 49272 85534913 ~ 85535135 (+) True G1499849
TU1714744 lncRNA downstream 54050 85539691 ~ 85539893 (+) True G1499853
TU1714747 lncRNA downstream 57886 85543527 ~ 85543815 (+) True G1499856
TU1714757 lncRNA downstream 66897 85552538 ~ 85553100 (+) True G1499863
XR_005037098.1 mRNA upstream 155664 85327262 ~ 85329770 (+) False LOC118940506
XR_005037093.1 mRNA upstream 164470 85319403 ~ 85320964 (+) False LOC118940504
XR_005037094.1 mRNA upstream 164470 85319404 ~ 85320964 (+) True LOC118940504
XM_036950833.1 mRNA upstream 197323 85269122 ~ 85288111 (+) False LOC110494772
XM_036950832.1 mRNA upstream 243635 85230782 ~ 85241799 (+) True fam210b
XM_036950838.1 mRNA downstream 244901 85730542 ~ 85821738 (+) False LOC110493284
XM_036950840.1 mRNA downstream 244901 85730542 ~ 85821738 (+) False LOC110493284
XM_036950842.1 mRNA downstream 244902 85730543 ~ 85821738 (+) False LOC110493284
XM_036950843.1 mRNA downstream 244902 85730543 ~ 85821738 (+) False LOC110493284
XM_036950844.1 mRNA downstream 244902 85730543 ~ 85821738 (+) False LOC110493284
TU1714136 other upstream 192313 85291785 ~ 85293121 (+) True G1499374
TU1714116 other upstream 197318 85269126 ~ 85288116 (+) False LOC110494772
TU1714823 other downstream 139802 85625443 ~ 85711859 (+) False G1499923
TU1715184 other downstream 781687 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 896657 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 1035189 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 1682898 87168539 ~ 87169007 (+) True G1501148

Expression Profile