RNA id: TU1715637


Basic Information

Item Value
RNA id TU1715637
length 635
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1500557
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85776280 ~ 85778950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacgtgtactggttgcTGGAGGGgggaaacaacgtgtactggttactggaggggtaaacaacgtgtactggttactggagggagaaacaacgtgtactggttactggagggataaacaacgtgtactggttactggagggagaaacaacgtgtactggttactggaggggtaaacaacgtgtactggttactggagggataaacaacgtgtactggttactggaggaagaaacaacgtgtactggttactggagtggtaaacaacgtgtactggttactggagggataaacaacgtgtactggttactggagggagaaacaacgtgtactggttactggagtggtaaacaacgtgtactggttactggagggataaacaacgtgtactggttactggaggggagaaacaacgtgtactggttactggagggataaacaacgtgtcctggttactggaggggagaacaacgtgtactggttactggaggaaTAAACAACGTgtcctggttactggagggataaacaacgtgtcctggttactggagggagaaacaacgtgtactggttactggagggataaacaacgtgtactggttactggagggataaacaacgtgtactggttactggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715612 lncRNA downstream 8284 85721611 ~ 85767996 (-) True G1500533
TU1715579 lncRNA downstream 24937 85669647 ~ 85751343 (-) True G1500504
TU1715595 lncRNA downstream 93176 85682675 ~ 85683104 (-) True G1500517
TU1715591 lncRNA downstream 93958 85677329 ~ 85682322 (-) True G1500513
TU1714743 lncRNA downstream 237618 85538462 ~ 85538662 (-) True G1499852
TU1715646 lncRNA upstream 16872 85795822 ~ 85827130 (-) False G1500565
TU1715648 lncRNA upstream 16872 85795822 ~ 85827130 (-) False G1500565
TU1715649 lncRNA upstream 16872 85795822 ~ 85827130 (-) False G1500565
TU1715651 lncRNA upstream 16872 85795822 ~ 85827130 (-) False G1500565
TU1715653 lncRNA upstream 16872 85795822 ~ 85827130 (-) True G1500565
XM_021570106.2 mRNA downstream 63150 85710201 ~ 85713130 (-) True LOC110494776
XM_021570105.2 mRNA downstream 350886 85344521 ~ 85425394 (-) True LOC110494775
XR_005037096.1 mRNA downstream 449568 85325153 ~ 85326712 (-) True LOC118940505
XR_005037095.1 mRNA downstream 449569 85325153 ~ 85326711 (-) False LOC118940505
XR_005037097.1 mRNA downstream 457427 85316345 ~ 85318853 (-) True LOC110487407
XM_036950855.1 mRNA upstream 339625 86118575 ~ 86156759 (-) False LOC110493286
XM_036950856.1 mRNA upstream 339625 86118575 ~ 86156759 (-) False LOC110493286
XM_036950854.1 mRNA upstream 339625 86118575 ~ 86183605 (-) True LOC110493286
XM_021570109.2 mRNA upstream 457604 86236554 ~ 86242991 (-) False LOC110494779
XM_021570110.2 mRNA upstream 457604 86236554 ~ 86242991 (-) False LOC110494779
TU1714519 other downstream 488163 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 488163 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 553161 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1718888 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1793386 83982341 ~ 83982894 (-) True G1498442
TU1715872 other upstream 460768 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 670729 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 1019115 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 1019115 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 1355108 87134058 ~ 87159244 (-) False G1501650

Expression Profile