RNA id: TU1715649


Basic Information

Item Value
RNA id TU1715649
length 2788
lncRNA type antisense_over
GC content 0.56
exon number 5
gene id G1500565
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85795822 ~ 85827130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAAATCAAATTGATAAAATAAATTCCACTCACATCCAAATCCTCCGGATGTGTTCAAATCATtgcaacacaaacacaggaacaatttctatagattttttttctctgcttttaatatatatcttttttttaaacaaaaaaaaaaaaaaaaactgattaaATCAAATGTACAATAGACATTATGCACTTTTAACTACTTCTTCTGGTACGCTCTGCACAGCTGTCACCGAAAAACAGAAGCACAATGaggggagagtggggtcatgGCACCGGGAGAATAGGGTAAGGTGGTGCTGCAAGGGTAGGCTTGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgaggtaggctaggacagggttagttgggctggtgaggtaggctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggctggtgaggtaggcttggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttggaCTGGTGAGGTAGGCTTGGACAGGGTTAGTTGGGCTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggcTGGTGAGGTAGGCTTGGACAGGGTTAGTTGGGCTGGTGAGGTAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggctggtgagGTAGGCTTGGACAGGGTTAGTTGGGCTGGTGAGGTAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggcTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGGAGgctaggacagggtaagttgggcTGGTGAGGTAGGCTAGGACAGGGTTAGttgagctggtgaggtaggctaggacagggtaagttgggcTGGTGATAGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggcTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggcTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggcTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGGAGgctaggacagggtaagttgggctggtgaggtaggctaggacagggttagttgggctggtgaggtaggctaggacagggtaagttgggcTGGTGAGAGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGAGAGgctaggacagggtaagttgggcTGGTGAGAGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggcTGGTGAGAGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgagggaggctaggacagggtaagttgggcTGGTGAGGGAGGCTAGGACAGGGTTAGTTGGGCTGGTGAGGTAGgctaggacagggtaagttgggctggtgaggtaggctaggacagggtaagttgggcTGGTGAGGTAGGCTAGGACAGGGTTAGTTGGGCTGGTGGCGTATGGGAAAATGGGGTAAGTTGGGCTGGTGAGGTAGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGTAGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGTAGGTGAGGAGGGGGTAAGTTGGGTTGGTGAGGTAGGTGAGGAGGGGGTAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGTAGGTGAGGAGGGGTTAAGTTGGGCTGGTGAAGTAGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTAGGGTAGGTGAGGAGGGGGTAAGTTGGGCTAGTGAGAAGGGGGTAAGTTGGGCTGGTGAGAAGGGGGTAAGTTGGGCTGGTGAGAAGGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGATGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGGTGAGGAGGGGGTAAGTTGGGCTGgtgaggagggggtaggggaggaggggagagtgagggaaacaggtgaggaagggagagggagggaaacaggtgaggaggggagagggagggaaacaggtgaggaggggagagggagggaaacaggggaggaggggagagggagggaaacaggggaagatgaggaagaggtgGAAACAGCAGGGAAGAGGGTGATGGCGTgttagggagagaaagaaagaacaacagaggtggagagagagagagggagggagagagatagagaggaacagaggtagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715637 lncRNA downstream 16872 85776280 ~ 85778950 (-) True G1500557
TU1715612 lncRNA downstream 27826 85721611 ~ 85767996 (-) True G1500533
TU1715579 lncRNA downstream 44479 85669647 ~ 85751343 (-) True G1500504
TU1715685 lncRNA upstream 5099 85832229 ~ 85834039 (-) False G1500587
TU1715684 lncRNA upstream 5596 85832726 ~ 85834039 (-) True G1500587
TU1715725 lncRNA upstream 97888 85925018 ~ 85925783 (-) True G1500624
TU1715728 lncRNA upstream 105948 85933078 ~ 85933418 (-) True G1500627
TU1715763 lncRNA upstream 165525 85992655 ~ 85993163 (-) True G1500652
XM_021570106.2 mRNA downstream 82692 85710201 ~ 85713130 (-) True LOC110494776
XM_021570105.2 mRNA downstream 370428 85344521 ~ 85425394 (-) True LOC110494775
XR_005037096.1 mRNA downstream 469110 85325153 ~ 85326712 (-) True LOC118940505
XR_005037095.1 mRNA downstream 469111 85325153 ~ 85326711 (-) False LOC118940505
XR_005037097.1 mRNA downstream 476969 85316345 ~ 85318853 (-) True LOC110487407
XM_036950855.1 mRNA upstream 291445 86118575 ~ 86156759 (-) False LOC110493286
XM_036950856.1 mRNA upstream 291445 86118575 ~ 86156759 (-) False LOC110493286
XM_036950854.1 mRNA upstream 291445 86118575 ~ 86183605 (-) True LOC110493286
XM_021570109.2 mRNA upstream 409424 86236554 ~ 86242991 (-) False LOC110494779
XM_021570110.2 mRNA upstream 409424 86236554 ~ 86242991 (-) False LOC110494779
TU1714519 other downstream 507705 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 507705 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 572703 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1738430 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1812928 83982341 ~ 83982894 (-) True G1498442
TU1715872 other upstream 412588 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 622549 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 970935 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 970935 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 1306928 87134058 ~ 87159244 (-) False G1501650

Expression Profile