RNA id: TU1715170


Basic Information

Item Value
RNA id TU1715170
length 460
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1500184
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86210413 ~ 86210904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacactcctgggccagactacactcaatcatatgacccactgaagcgatgagtcttcagtaaagacttaaaggttgagactgagtctgcgtctcttacatgggtaggcagaccattccattaaaatggagctctataggagaaagccctggtTACATTCAATTAGTTAATTTAAGTTTCATCACATTTCCGAGGACGTCAGTAACCCTGGGGTGCCGTGGGTAACAGTAACCCTGGGGTGCCGTGGGTAACAGTAACCCTGGGGTGCCGTGGGTAACAGTAACCCTGGGGTGCCGTGGGTAACAGTAACCCTGGGGTGCCCCCCCCCAGGAAGCGCCAGCAAGTTGCTGACGCAAGGgtcaccctctctcctccactacaaggccttagtgatgtgttctctctctcctccactacaaggccttagtgatgtgttctctctctcctccactacaaggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715143 lncRNA upstream 23635 86186385 ~ 86186778 (+) True G1500159
TU1715097 lncRNA upstream 70069 86138688 ~ 86140344 (+) True G1500125
TU1715093 lncRNA upstream 75289 86133509 ~ 86135124 (+) False G1500123
TU1715094 lncRNA upstream 75289 86133509 ~ 86135124 (+) True G1500123
TU1715089 lncRNA upstream 90875 86118587 ~ 86119538 (+) False G1500122
TU1715171 lncRNA downstream 8454 86219358 ~ 86220198 (+) True G1500185
TU1715172 lncRNA downstream 11264 86222168 ~ 86223815 (+) True G1500186
TU1715173 lncRNA downstream 22749 86233653 ~ 86234108 (+) True G1500187
TU1715178 lncRNA downstream 38222 86249126 ~ 86250123 (+) True G1500192
TU1715228 lncRNA downstream 162148 86373052 ~ 86377080 (+) True G1500236
XM_036950847.1 mRNA upstream 104476 86102351 ~ 86105937 (+) True LOC118936559
XM_021570107.2 mRNA upstream 108102 86092647 ~ 86102311 (+) True LOC110494777
XM_036950845.1 mRNA upstream 200972 85849052 ~ 86009441 (+) False LOC110493285
XM_036950846.1 mRNA upstream 200972 85849052 ~ 86009441 (+) True LOC110493285
XM_036950839.1 mRNA upstream 388675 85757645 ~ 85821738 (+) False LOC110493284
XM_036950862.1 mRNA downstream 65486 86276390 ~ 86452362 (+) True LOC118940507
XM_036950863.1 mRNA downstream 256222 86467126 ~ 86511354 (+) True soat2
XM_021570140.2 mRNA downstream 445774 86656678 ~ 86673359 (+) False tarbp2
XM_021570139.2 mRNA downstream 445775 86656679 ~ 86673359 (+) True tarbp2
XM_021570134.2 mRNA downstream 488634 86699538 ~ 86711214 (+) False sp1
TU1714823 other upstream 498554 85625443 ~ 85711859 (+) False G1499923
TU1714136 other upstream 917292 85291785 ~ 85293121 (+) True G1499374
TU1714117 other upstream 922297 85269126 ~ 85288116 (+) False LOC110494772
TU1715184 other downstream 56424 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 171394 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 309926 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 957635 87168539 ~ 87169007 (+) True G1501148
TU1716434 other downstream 1213606 87424510 ~ 87486890 (+) True LOC110494789

Expression Profile