RNA id: TU1715173


Basic Information

Item Value
RNA id TU1715173
length 359
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1500187
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86233653 ~ 86234108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTTTCACCAGAAATGTCTCGTTACTTTGCCATGCGGGACATAGTCATGTGTAAAGTGACAGAACCATAGCATTTCAAGTCATGTCCGTGTATCCATGGGTGGGCTTGAGGTAATGAGGACTATCTAGCTGGTATTAATGACCCGACTTCACATAACACGCCCAATAACGGCATTTGCGCCAAGCAAACCACTGTTTTTCAATAGAGAACTAAGTTTCAATTACGTAAATGGCTACAGTGAGTTAACTTCTACACCTGACCCCTCAGTGAGCTAACTTCTACACCTGACCCCTCAGTGAGCTAACTTCTACACCTGACCCCTCAGTGAGCTTGACACCTTGTGCAGACCAAGTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715172 lncRNA upstream 9838 86222168 ~ 86223815 (+) True G1500186
TU1715171 lncRNA upstream 13455 86219358 ~ 86220198 (+) True G1500185
TU1715170 lncRNA upstream 22749 86210413 ~ 86210904 (+) True G1500184
TU1715143 lncRNA upstream 46875 86186385 ~ 86186778 (+) True G1500159
TU1715097 lncRNA upstream 93309 86138688 ~ 86140344 (+) True G1500125
TU1715178 lncRNA downstream 15018 86249126 ~ 86250123 (+) True G1500192
TU1715228 lncRNA downstream 138944 86373052 ~ 86377080 (+) True G1500236
TU1715232 lncRNA downstream 149689 86383797 ~ 86384244 (+) True G1500240
TU1715242 lncRNA downstream 183096 86417204 ~ 86417458 (+) True G1500249
TU1715246 lncRNA downstream 186955 86421063 ~ 86421263 (+) True G1500253
XM_036950847.1 mRNA upstream 127716 86102351 ~ 86105937 (+) True LOC118936559
XM_021570107.2 mRNA upstream 131342 86092647 ~ 86102311 (+) True LOC110494777
XM_036950845.1 mRNA upstream 224212 85849052 ~ 86009441 (+) False LOC110493285
XM_036950846.1 mRNA upstream 224212 85849052 ~ 86009441 (+) True LOC110493285
XM_036950839.1 mRNA upstream 411915 85757645 ~ 85821738 (+) False LOC110493284
XM_036950862.1 mRNA downstream 42282 86276390 ~ 86452362 (+) True LOC118940507
XM_036950863.1 mRNA downstream 233018 86467126 ~ 86511354 (+) True soat2
XM_021570140.2 mRNA downstream 422570 86656678 ~ 86673359 (+) False tarbp2
XM_021570139.2 mRNA downstream 422571 86656679 ~ 86673359 (+) True tarbp2
XM_021570134.2 mRNA downstream 465430 86699538 ~ 86711214 (+) False sp1
TU1714823 other upstream 521794 85625443 ~ 85711859 (+) False G1499923
TU1714136 other upstream 940532 85291785 ~ 85293121 (+) True G1499374
TU1714117 other upstream 945537 85269126 ~ 85288116 (+) False LOC110494772
TU1715184 other downstream 33220 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 148190 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 286722 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 934431 87168539 ~ 87169007 (+) True G1501148
TU1716434 other downstream 1190402 87424510 ~ 87486890 (+) True LOC110494789

Expression Profile