RNA id: TU1715178


Basic Information

Item Value
RNA id TU1715178
length 908
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1500192
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86249126 ~ 86250123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAATCATGTTGTTTATTCAGATGATATCTCAACAACAGTCAGGTACAGTACAGTCCATCGTAGGCAATGAAAAACAACACAGTAGATTTAAAAGTAGTGTGTGGTATTTTAGTCTCAGCCACAATAATAATAAGTTACAAGCAACTGAGCATGAAACATTTAAGGTACACAGGCATATTTACAAGCATCCCTCCGGGACTTCAggccccccccaacacacactgctACATGTCCATACATCGTCTTTCTGGTTGACGACGCGTCCCGATTCTTCACCcttctcccaaagtgtgcactagCACACTTCCCGAAAAGGGTGGATAAATCAGCATTGGTTGTTTGTTTTTGTGCAGTAATGTTGTAGACAACATGGCTATTCCACTTCTTGAGCCCTCAAAATTGGGACATTCAATGAAATGACTTAGCGGAATGTTGTAGCACAGAACTACAACTAGTGTGGATGAAGAGGTTGAAAGGATCTGGATAAATATTTTTCATTGCGAAAAAGCCAGCGAGCTTTGAagggataatatatatatatatatgtgggtGTAATGCATTGCATTTGATACTAAATTAAAGACTTCAAATGGAGAGATGTggaaaaggagaaaaataaatcaaGAAAATTTGGTGGCCATTTGAGCTTTTTTTTGTCcggttttttctttttttatactTTCAAATCAAAACATTCCACTTTGCAGGAAAAAAAAGAAGGCTGACGTggaagagatacagagagagataagatCCTCCACTCCCTCAATTTGCCCAACTGTCCTGacagacgtttttttttttttttaataaagaaaCCAGATTTATTTGTTGAGAGTCTTCATTCTCTGGTCCAGAGCTGCAAAGTTCTCCTCTACAGACAAGAGATTCTCCTTCATGGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715173 lncRNA upstream 15018 86233653 ~ 86234108 (+) True G1500187
TU1715172 lncRNA upstream 25311 86222168 ~ 86223815 (+) True G1500186
TU1715171 lncRNA upstream 28928 86219358 ~ 86220198 (+) True G1500185
TU1715170 lncRNA upstream 38222 86210413 ~ 86210904 (+) True G1500184
TU1715143 lncRNA upstream 62348 86186385 ~ 86186778 (+) True G1500159
TU1715228 lncRNA downstream 122929 86373052 ~ 86377080 (+) True G1500236
TU1715232 lncRNA downstream 133674 86383797 ~ 86384244 (+) True G1500240
TU1715242 lncRNA downstream 167081 86417204 ~ 86417458 (+) True G1500249
TU1715246 lncRNA downstream 170940 86421063 ~ 86421263 (+) True G1500253
TU1715247 lncRNA downstream 174843 86424966 ~ 86425257 (+) True G1500254
XR_005037099.1 mRNA upstream 10772 86183733 ~ 86238354 (+) False mars1
XR_005037100.1 mRNA upstream 10772 86183733 ~ 86238354 (+) False mars1
XR_005037101.1 mRNA upstream 10772 86183733 ~ 86238354 (+) True mars1
XM_036950851.1 mRNA upstream 12051 86183733 ~ 86237075 (+) False mars1
XM_036950852.1 mRNA upstream 12051 86183733 ~ 86237075 (+) False mars1
XM_036950862.1 mRNA downstream 26267 86276390 ~ 86452362 (+) True LOC118940507
XM_036950863.1 mRNA downstream 217003 86467126 ~ 86511354 (+) True soat2
XM_021570140.2 mRNA downstream 406555 86656678 ~ 86673359 (+) False tarbp2
XM_021570139.2 mRNA downstream 406556 86656679 ~ 86673359 (+) True tarbp2
XM_021570134.2 mRNA downstream 449415 86699538 ~ 86711214 (+) False sp1
TU1714823 other upstream 537267 85625443 ~ 85711859 (+) False G1499923
TU1714136 other upstream 956005 85291785 ~ 85293121 (+) True G1499374
TU1714117 other upstream 961010 85269126 ~ 85288116 (+) False LOC110494772
TU1715184 other downstream 17205 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 132175 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 270707 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 918416 87168539 ~ 87169007 (+) True G1501148
TU1716434 other downstream 1174387 87424510 ~ 87486890 (+) True LOC110494789

Expression Profile