RNA id: TU1715970


Basic Information

Item Value
RNA id TU1715970
length 539
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G1500835
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86451086 ~ 86451624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaaaggagagagaaagagagatctagagtttatctagttCACTTTccaagccaataaagcccttaaattgaaattgaaattgaattgagagagagagacggagagggcaGGTGTATAGAAATACACAAGTAAATGAATCTGCCATCTTAGATTATGTCTGTTATGAAATACTCATTCAATATTCTCCCtattcccttcctccctcacgtGAGGAGCTGGGTCACTAGCTGGTAGCCTGTTCTGGTTGGATGACGTGGTGCAGCTTGGCTGGGCTGTCCTGGTTCTGGTTGTCGCAGTGCTGCACATCACTCCTGGACACAGCAGCAGAGTGGACACTCAGAGACAAGCTATACCACAGCGCCAGGGCAGGGAAAACAGTCGGCAGTCAGGAAGAAAGGCCGTAGCAGCAGGAGGGAAACCAGAAACACATGTGACGGAAAGCAGCGAGGGACAAGTGTaggagtgtgtgtcagtgtcagtgcCTCAGGTTCACAATAGAATGTATTCAACGCGGTTTGATAATGCCACTGTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715968 lncRNA downstream 1601 86449241 ~ 86449485 (-) True G1500833
TU1715967 lncRNA downstream 4875 86445833 ~ 86446211 (-) True G1500832
TU1715965 lncRNA downstream 5719 86442547 ~ 86445367 (-) True G1500830
TU1715964 lncRNA downstream 13625 86435625 ~ 86437461 (-) True G1500829
TU1715958 lncRNA downstream 21364 86428896 ~ 86429722 (-) False G1500824
TU1715999 lncRNA upstream 53210 86504834 ~ 86509078 (-) False G1500861
TU1715998 lncRNA upstream 54475 86506099 ~ 86508843 (-) False G1500861
TU1716002 lncRNA upstream 54475 86506099 ~ 86509078 (-) False G1500861
TU1716000 lncRNA upstream 55966 86507590 ~ 86508843 (-) True G1500861
TU1715977 lncRNA upstream 84610 86536234 ~ 86537116 (-) True G1500840
XM_036950861.1 mRNA downstream 175027 86249232 ~ 86276059 (-) True dctn2
XM_036950858.1 mRNA downstream 175028 86249232 ~ 86276058 (-) False dctn2
XM_036950859.1 mRNA downstream 175028 86249232 ~ 86276058 (-) False dctn2
XM_036950860.1 mRNA downstream 175028 86249232 ~ 86276058 (-) False dctn2
XM_021570111.2 mRNA downstream 208095 86236554 ~ 86242991 (-) False LOC110494779
XM_036950865.1 mRNA upstream 89175 86540799 ~ 86555989 (-) True igsf8
XM_021570138.2 mRNA upstream 154316 86605940 ~ 86610581 (-) True sp7
XM_036950866.1 mRNA upstream 221828 86673452 ~ 86697487 (-) False tespa1
XM_036950867.1 mRNA upstream 221828 86673452 ~ 86697487 (-) True tespa1
XM_021570514.2 mRNA upstream 259829 86711453 ~ 86714926 (-) False LOC110495202
TU1715969 other downstream 352 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 208158 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1162969 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1162969 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1227967 85221125 ~ 85223119 (-) True G1499671
TU1716092 other upstream 346441 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 346441 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 682434 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 943156 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1710654 88162278 ~ 88175346 (-) False dnsl3

Expression Profile