RNA id: TU1715154


Basic Information

Item Value
RNA id TU1715154
length 1381
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1500168
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86460154 ~ 86464207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgccttgatggcagctttaaacactcttggcattctctcaatcaacttcacctggaattttttagtcagtttagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcaaaacgacagctcagggGTTTGaactccaacgctctaaccattaggctaccctgccgaatgcttttccaaaagtcttaaaggagttcccacatatgctgagcacttgttgtctgcttttccttcactctgtggtccaactcttcccaaaccatctcaattgggttgaggtcggttgattgtggaggccaggtcatctgatgcagcactccatcactctccttcttggtcaaatagcccatacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtcaaaTTAAGCAcagaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctagttaagtgcgccttgaattctaaataaatcactgacagtgtcaccagcaaatcacccccacatcatatcacctcctcctccttgcttcacggtgggaaataaacatgcagagatcatccgttcacccacaccacttcctcctccatgcttcacggtgggaaataaacatgcagagatcatccgttcacccacaccacttcctcctccatgcttcacagtgggaaataaacatgcagagatcatctgttcacccacaccgcatctaacaaagacacggcggttgggggaaaagaaaaaaaaattggactcatcagaccaaaggacagatttccaccggtctattgctcatgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagaggattctttgcagcaatttgaccatgaaggcctgattcacgcagtttcctcagaacagttgatgttgagatttgtgAAGCAAATTGCTGAGGCtggaaactctaatgaacttatcctctgcagcagaggtaactctgggtcttccattcctgtggcggtcctcatgagagcaggtttcatcatagcgcttgatgttttttgtgtctgcacttgaagaaacttttaaagttcttgaaatgttcctccGCATTGACTTCATGTCTTGAAGCAAtgacggactgtcatttctctttgcttatttgagctgttaatatggactcggtcttttaccaaatagggctatcttctgtatacacccCCTACCTTCTAacaacacatctgattggctcaaaggcattaagatggaaataaattccactatttaacttttaacaaggcacacctgttaattgaaatgcattccaagtgactacctcatgaaactggttga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715158 lncRNA upstream 289 86458377 ~ 86459865 (+) True G1500172
TU1715162 lncRNA upstream 3941 86453100 ~ 86456213 (+) True G1500176
TU1715252 lncRNA upstream 26079 86433703 ~ 86434075 (+) True G1500259
TU1715251 lncRNA upstream 27422 86432489 ~ 86432732 (+) True G1500258
TU1715247 lncRNA upstream 34897 86424966 ~ 86425257 (+) True G1500254
TU1715153 lncRNA downstream 196 86464403 ~ 86465937 (+) True G1500167
TU1715260 lncRNA downstream 2394 86466601 ~ 86466938 (+) True G1500267
TU1715263 lncRNA downstream 45408 86509615 ~ 86510645 (+) True G1500270
TU1715157 lncRNA downstream 50559 86514766 ~ 86519779 (+) True G1500171
TU1715155 lncRNA downstream 67059 86531266 ~ 86535084 (+) True G1500169
XM_036950862.1 mRNA upstream 7792 86276390 ~ 86452362 (+) True LOC118940507
XR_005037099.1 mRNA upstream 221800 86183733 ~ 86238354 (+) False mars1
XR_005037100.1 mRNA upstream 221800 86183733 ~ 86238354 (+) False mars1
XR_005037101.1 mRNA upstream 221800 86183733 ~ 86238354 (+) True mars1
XM_036950853.1 mRNA upstream 223079 86183733 ~ 86237075 (+) False mars1
XM_036950863.1 mRNA downstream 2919 86467126 ~ 86511354 (+) True soat2
XM_021570140.2 mRNA downstream 192471 86656678 ~ 86673359 (+) False tarbp2
XM_021570139.2 mRNA downstream 192472 86656679 ~ 86673359 (+) True tarbp2
XM_021570134.2 mRNA downstream 235331 86699538 ~ 86711214 (+) False sp1
XM_021570135.2 mRNA downstream 235425 86699632 ~ 86711214 (+) True sp1
TU1715231 other upstream 76609 86382298 ~ 86383545 (+) True G1500239
TU1715184 other upstream 191979 86267328 ~ 86268175 (+) True G1500198
TU1714823 other upstream 748295 85625443 ~ 85711859 (+) False G1499923
TU1714136 other upstream 1167033 85291785 ~ 85293121 (+) True G1499374
TU1714119 other upstream 1172038 85269126 ~ 85288116 (+) True LOC110494772
TU1715156 other downstream 56623 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 704332 87168539 ~ 87169007 (+) True G1501148
TU1716434 other downstream 960303 87424510 ~ 87486890 (+) True LOC110494789
TU1716787 other downstream 1625450 88089657 ~ 88104227 (+) False LOC110494816
TU1716783 other downstream 1645997 88110204 ~ 88124874 (+) True LOC110494816

Expression Profile