RNA id: TU1715977


Basic Information

Item Value
RNA id TU1715977
length 883
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1500840
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86536234 ~ 86537116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTAAACAAAGCCATTGTTTGTAtgagcctgatcccagatctgtttgttctgTTTTGCCAATTCCTATTGTTTATCTATGGTGCCAAACATAAGTGTTGTCAAGATGGGACTAACAAGTCTAGGATCAGGTTAGGACATGGCCAGGGGATATTCTGATGCAGCGAAGGACAATAACGAACCATTCCATACTGTTCGCTAAACTGAGTAAAATTATTTCTGTATCTATTTTAGACATTTATGAAGAGAGTTAATATACGATAGTAAGCATCCATGCACTAAGCTGAAATCTGTGTGTTGTTACGGTATACACCAGAGAGattcgtttttttttctctttttactTCTAAAACATAAGATATGATGAGACCCTACTTGAAATGCTGTGCTTGTCTGTGAGCTGAGCGGACGACTTTAACATTCAGCGGCTGTCTGTTTGTTCTTAAAGCACTTGGACCAAAACTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAATCTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAATCTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715999 lncRNA downstream 27156 86504834 ~ 86509078 (-) False G1500861
TU1716002 lncRNA downstream 27156 86506099 ~ 86509078 (-) False G1500861
TU1715998 lncRNA downstream 27391 86506099 ~ 86508843 (-) False G1500861
TU1716000 lncRNA downstream 27391 86507590 ~ 86508843 (-) True G1500861
TU1715970 lncRNA downstream 84610 86451086 ~ 86451624 (-) True G1500835
TU1716008 lncRNA upstream 6171 86543287 ~ 86543987 (-) True G1500866
TU1716022 lncRNA upstream 38466 86575582 ~ 86579680 (-) False G1500879
TU1716023 lncRNA upstream 38466 86575582 ~ 86579680 (-) True G1500879
TU1716035 lncRNA upstream 76564 86613680 ~ 86615356 (-) True G1500889
TU1716048 lncRNA upstream 98903 86636019 ~ 86728444 (-) True G1500900
XM_036950861.1 mRNA downstream 260175 86249232 ~ 86276059 (-) True dctn2
XM_036950858.1 mRNA downstream 260176 86249232 ~ 86276058 (-) False dctn2
XM_036950859.1 mRNA downstream 260176 86249232 ~ 86276058 (-) False dctn2
XM_036950860.1 mRNA downstream 260176 86249232 ~ 86276058 (-) False dctn2
XM_021570111.2 mRNA downstream 293243 86236554 ~ 86242991 (-) False LOC110494779
XM_036950865.1 mRNA upstream 3683 86540799 ~ 86555989 (-) True igsf8
XM_021570138.2 mRNA upstream 68824 86605940 ~ 86610581 (-) True sp7
XM_036950866.1 mRNA upstream 136336 86673452 ~ 86697487 (-) False tespa1
XM_036950867.1 mRNA upstream 136336 86673452 ~ 86697487 (-) True tespa1
XM_021570514.2 mRNA upstream 174337 86711453 ~ 86714926 (-) False LOC110495202
TU1715969 other downstream 85500 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 293306 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1248117 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1248117 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1313115 85221125 ~ 85223119 (-) True G1499671
TU1716092 other upstream 260949 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 260949 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 596942 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 857664 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1625162 88162278 ~ 88175346 (-) False dnsl3

Expression Profile