RNA id: TU1716022


Basic Information

Item Value
RNA id TU1716022
length 513
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G1500879
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86575582 ~ 86579680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccattctcctatatccttccgcgcactgctccatcgaatcccaggcgggctccggcactctccctgggtcggccgcccacctgtcgatctcctcccaagtcgtatactccatactgcactcctctttgggctgctcctgttgtttcttctcccgctgcacctttgggcggctacactcccctggtttagcccagggtcctctcccgtcgaggatttcctcccatgtccagaaatccttattgcgcatctcctcgcgctgctcctgcctgttgacacgctgcttggtccttttgtggtgggtgattctgtcacggttttctgtatgtgaaggagagtcggaccaaaatgcggcgtgtagattacgatccatgtttattgactatagcaacacgaatctaaatacaaacagtgcaaaataataaacgtaatgaaaaccgaaacagcctaaactggtgcaaactaacactaaggacaggaacaatcacccacaaacacacagtgaaacccaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716008 lncRNA downstream 31595 86543287 ~ 86543987 (-) True G1500866
TU1715977 lncRNA downstream 38466 86536234 ~ 86537116 (-) True G1500840
TU1715999 lncRNA downstream 66504 86504834 ~ 86509078 (-) False G1500861
TU1716035 lncRNA upstream 34000 86613680 ~ 86615356 (-) True G1500889
TU1716048 lncRNA upstream 56339 86636019 ~ 86728444 (-) True G1500900
TU1716061 lncRNA upstream 91867 86671547 ~ 86673353 (-) True G1500913
TU1716066 lncRNA upstream 95952 86675632 ~ 86676110 (-) True G1500918
TU1716081 lncRNA upstream 114196 86693876 ~ 86694307 (-) True G1500930
XM_036950865.1 mRNA downstream 19593 86540799 ~ 86555989 (-) True igsf8
XM_036950861.1 mRNA downstream 299523 86249232 ~ 86276059 (-) True dctn2
XM_036950858.1 mRNA downstream 299524 86249232 ~ 86276058 (-) False dctn2
XM_036950859.1 mRNA downstream 299524 86249232 ~ 86276058 (-) False dctn2
XM_036950860.1 mRNA downstream 299524 86249232 ~ 86276058 (-) False dctn2
XM_021570138.2 mRNA upstream 26260 86605940 ~ 86610581 (-) True sp7
XM_036950866.1 mRNA upstream 93772 86673452 ~ 86697487 (-) False tespa1
XM_036950867.1 mRNA upstream 93772 86673452 ~ 86697487 (-) True tespa1
XM_021570514.2 mRNA upstream 131773 86711453 ~ 86714926 (-) False LOC110495202
XM_021570515.2 mRNA upstream 131773 86711453 ~ 86714926 (-) True LOC110495202
TU1715969 other downstream 124848 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 332654 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1287465 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1287465 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1352463 85221125 ~ 85223119 (-) True G1499671
TU1716092 other upstream 218385 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 218385 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 554378 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 815100 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1582598 88162278 ~ 88175346 (-) False dnsl3

Expression Profile