RNA id: TU1716416


Basic Information

Item Value
RNA id TU1716416
length 254
lncRNA type intronic
GC content 0.55
exon number 2
gene id G1501218
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87340152 ~ 87340458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaacatccctggtcatccctactgcctctgatctggcggactcactgaaccgagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacgtccctggtcatccctactgcctctgatctggaggactcactgaacagagaacatccctggtcctccctactgcctactgatctggcggactcactgaacagagaacatccctggtcctccctactgcctactgatctggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716362 lncRNA upstream 98791 87241130 ~ 87241361 (+) True G1501171
TU1716360 lncRNA upstream 103555 87236383 ~ 87236597 (+) True G1501169
TU1716356 lncRNA upstream 108530 87231335 ~ 87231622 (+) True G1501165
TU1716346 lncRNA upstream 149877 87182060 ~ 87190275 (+) True G1501156
TU1716338 lncRNA upstream 161844 87178070 ~ 87178308 (+) True G1501151
TU1716512 lncRNA downstream 160782 87501240 ~ 87502220 (+) True G1501298
TU1716519 lncRNA downstream 185682 87526140 ~ 87527748 (+) True G1501305
TU1716530 lncRNA downstream 201841 87542299 ~ 87543995 (+) False G1501316
TU1716531 lncRNA downstream 201841 87542299 ~ 87546185 (+) True G1501316
TU1716578 lncRNA downstream 285705 87626163 ~ 87626792 (+) True G1501362
XM_036950902.1 mRNA upstream 86077 87181451 ~ 87254075 (+) True LOC110494792
XM_036950897.1 mRNA upstream 167867 87134096 ~ 87172285 (+) False nckap1l
XM_036950899.1 mRNA upstream 167867 87134097 ~ 87172285 (+) True nckap1l
XM_036950901.1 mRNA upstream 169124 87134096 ~ 87171028 (+) False nckap1l
XM_036950900.1 mRNA upstream 170154 87134096 ~ 87169998 (+) False nckap1l
XM_021570120.2 mRNA downstream 75262 87415720 ~ 87431940 (+) False LOC110494789
XM_021570118.2 mRNA downstream 83973 87424431 ~ 87431940 (+) False LOC110494789
XM_021570119.2 mRNA downstream 83973 87424431 ~ 87431940 (+) False LOC110494789
XM_021570123.2 mRNA downstream 83973 87424431 ~ 87431940 (+) False LOC110494789
XM_036950911.1 mRNA downstream 93253 87433711 ~ 87441188 (+) False LOC110519410
TU1716335 other upstream 171145 87168539 ~ 87169007 (+) True G1501148
TU1715156 other upstream 813122 86520830 ~ 86527030 (+) True G1500170
TU1715231 other upstream 956607 86382298 ~ 86383545 (+) True G1500239
TU1715184 other upstream 1071977 86267328 ~ 86268175 (+) True G1500198
TU1714823 other upstream 1628293 85625443 ~ 85711859 (+) False G1499923
TU1716434 other downstream 84052 87424510 ~ 87486890 (+) True LOC110494789
TU1716787 other downstream 749199 88089657 ~ 88104227 (+) False LOC110494816
TU1716783 other downstream 769746 88110204 ~ 88124874 (+) True LOC110494816
TU1717736 other downstream 1429412 88769870 ~ 88800640 (+) True G1502352
TU1717757 other downstream 1466520 88806978 ~ 88808969 (+) False G1502370

Expression Profile