RNA id: TU1717494


Basic Information

Item Value
RNA id TU1717494
length 1895
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G1502135
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88283989 ~ 88297048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctctacaacaccacgactaccctctactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctctacaacaccacgactaccctctactacaccactactaccctctactacaccactactaccctctactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctctacaacaccacgactaccctctactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctctacaacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctctacaacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactactaccctctacaacaccacgactaccctctactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctctacaacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactataccactactaccctctactacaccactgctaccctccactacaccactactaccctccactacaccactactaccctctacaacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccacgaCTACCCTCCACTaaaccactactaccctccactacaccactactaccctgcagtacaccactactaccctccactataccactactaccctccactacaccactactaccctccactacaccactactaccttccactacaccactactaccctccactacaccactactaccttccactacaccactactaccctccactacaccactactaccctctacaacaccactactaccctccactacaccactactaccctccactaaaccactactaccctctactacaccactgctaccgtccactacaccactactaccctccacaacaccactactaccctctactacaccactactaccctccactacaccactactaccctccactacaccactactaccctccactacaccactactaccgtccactacaccactactaccctccactacaccactactaccctctactacaccactactaccctccactactaacctccactacaccactactaccctccactccaccactacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1717468 lncRNA downstream 29889 88253842 ~ 88254100 (-) True G1502114
TU1717465 lncRNA downstream 35666 88247911 ~ 88248323 (-) True G1502111
TU1717464 lncRNA downstream 36379 88247393 ~ 88247610 (-) True G1502110
TU1717457 lncRNA downstream 51927 88229631 ~ 88232062 (-) True G1502103
TU1717443 lncRNA downstream 64039 88219031 ~ 88219950 (-) True G1502095
TU1717491 lncRNA upstream 2227 88291602 ~ 88297048 (-) True G1502135
TU1717496 lncRNA upstream 2356 88291731 ~ 88296586 (-) True G1502136
TU1717514 lncRNA upstream 30872 88320247 ~ 88320766 (-) True G1502154
TU1717528 lncRNA upstream 53425 88342800 ~ 88343152 (-) True G1502167
TU1717945 lncRNA upstream 68777 88358152 ~ 88425505 (-) False G1502489
XM_021570146.2 mRNA downstream 38484 88233684 ~ 88245505 (-) True zgc:171566
XM_021570147.2 mRNA downstream 100232 88181683 ~ 88183757 (-) False LOC110494815
NM_001165127.1 mRNA downstream 108644 88162116 ~ 88175345 (-) False dnsl3
XM_036950920.1 mRNA downstream 124985 88144616 ~ 88159004 (-) True LOC110493297
XM_036950913.1 mRNA downstream 776401 87494104 ~ 87507588 (-) True LOC110495200
XM_036948442.1 mRNA upstream 147871 88437246 ~ 88600371 (-) True LOC110494809
LOC110493292 mRNA upstream 583545 88872920 ~ 88877452 (-) False LOC110493292
XM_036950931.1 mRNA upstream 612483 88901858 ~ 88907612 (-) False LOC118940510
XM_036950929.1 mRNA upstream 612483 88901858 ~ 88907675 (-) True LOC118940510
XM_036950943.1 mRNA upstream 1288197 89577572 ~ 89658569 (-) False pcbp4
TU1717411 other downstream 108643 88162278 ~ 88175346 (-) False dnsl3
TU1717412 other downstream 119447 88162278 ~ 88164542 (-) True dnsl3
TU1717031 other downstream 888154 87394780 ~ 87395835 (-) True G1501745
TU1716920 other downstream 1124745 87134058 ~ 87159244 (-) False G1501650
TU1716092 other downstream 1477458 86798065 ~ 86806531 (-) False LOC110493290
TU1717937 other upstream 68777 88358152 ~ 88425505 (-) False G1502489
TU1717938 other upstream 129624 88418999 ~ 88425505 (-) False G1502489
TU1718044 other upstream 260991 88550366 ~ 88552831 (-) True G1502566
TU1718207 other upstream 583400 88872775 ~ 88874526 (-) True LOC110493292
TU1719190 other upstream 1286586 89575961 ~ 89578851 (-) True pcbp4

Expression Profile