RNA id: TU1717937


Basic Information

Item Value
RNA id TU1717937
length 4072
RNA type TUCP
GC content 0.42
exon number 4
gene id G1502489
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88358152 ~ 88425505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tTATTTTTCACTTTTCCCCTCACAAAGTTGTCAAATTACAAATGTCACCTATCAAAGCAAAGGATACTTACTAAAAATATGCTTTTTTTTTATCatcactagaaatgtaaaaaccaGGCAATAACAGCACAAAGCAATGATATGAAGAACAGTAGTACAATAGAGGTCATATATTGTCACATCAATCAGTTTGGTCTTCATAAAGGTACTTGGGAAATAAATATGAGAGGAGCTGAGGACTCTCTAAGGAACACATCCAATGTTCACCACAGCACAGGCAGCAGGATCACAGTTACAGTAGGAGAGGTGGGGCTGCGTTGCTAATCTGATTGATGAAGCATGGAttctctagcctggtcccagatctgttctgTTTTTACTAACCCTCTGGTGAGTCAGGACCATAGGGGTCGACCAGACAgcataaactgatctgggaccaggctatgtctCCATAGGTCAAGCTCATTCCAAGACAGATAcagtcaaaataaaaaataaaaaacatgatcTATATCTGCTATTTTCTACTATACTCAATGTCGTGTTCGATTTCAACATAATGTGTCCCTTGCATACCTGCTGTGTTAATGAATTATAATAATTGACTATCGTTGCATTGAATTAAATGGGAACAGATTTCATTTTGAAATGACATTTAGTCTTTCTGCAGATACATATTTATGTAacatgttacatgtaaatatgtaTCTGTAAAATTGATCCCAAATTAAGATTTATTTGGTAACCGCGATCGTGTTTATTGTTCGGCCAATAACTCGCCGCGTATTCAGTCATCGTTATGTATGGTGAGATCGCCATGTGTCTCAATACATTcaagtacatattacctcaattagcccgactagtCGGtggcccccgcacattggctacctgaattatctgcattgtgtcccgccacccccaactcgccaacccctcttttacgctgctgccactctctgtttatcgtctatgtatagtcactttaactatacctacatgtacatattaccgcaattagcccgactaaccggtgcattgactctctaccggtaccacctgcatatagcctccacattgactctgtaccggtaccacctgcatatagcctccacattgaccctgtaccagtaccccctgtatatagcctccacattgactctgtactagtaccccctgtatatagcctccacattgactctgtaccggtaccacctgtatatagcctccacattgactctgtaccggtaccccctgtatatagactccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccacctgcatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatttagcctccacattgactctgtaccggtaccccctgtatttagcctccacattgactctgtaccagtaccacctgcatatagcctccacattgactctgtactggtaccacctgcatatagcctccacattgactctgtaccggtaccacctgtatatagcctccacattgactctgtaccggtaccacctgtatatagtctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagactccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccacctgcatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatttagcctccacattgactctgtaccggtaccccctgtatttagcctccacattgactctgtaccggtaccacctgcatatagcctccacattgactctgtaccggtaccacctgtatatagcttcgctaCTGTTAATTTCACTTTCATTGTACTGCTTTTTAAATttatttacttatctattgtttacatAATGCCTATGTTTTACTTAAacattgcactgttggttaagggcttgtaagtaaggatttcactgtaaggtctagctagctagatacctaGCTAACTACTAGTGATTTGTTAcaggtatctagctagctaactacctgttgtattcggcgcacgtgacaaatacacttttgATTTGGTAGAGTGTGGTGCTTGCAACGCTAggcttgtgggttcgattcctacGGTGGATCAGTACAAAGATGTTTTGTATGTATAAGATGTTTTCActtctgtaagttgctctggataagatcgTCTGCTCAGTGACTTCAATGTAAGACCGTTCCCAGTAGCATCTCCGTTATAGGCCTGAAGAAATGGTGCCTCTTTATATGAAATGTGTGAGCGCTATTTTATTTTAGCAACATTCTTTACGACAAGAGTATGTCTCAACCTACGTGTGACACTAAGACACAATGTTTAATGTGTGACACTAAGACACAATGTTTAATGTGTAGTACTAACTACACAAGCCTCTTAAGTCATTTGTCTTGGAAGCAGCATTGTTGTGGGGTGATAGGGAGACAAGGGGCTAAACTGCCCTGGAGAAGCCTGTGGTGTAGCGGCTTTAGCCCCCTAGTGTGGGGGTTTGTGGAGGGAGCACTGGGTCCTTACACCCAGCAATTAGTTCTTCCTCACCTTCCGCCATGatatgtggatatgtggtgggAGTTGATTTTCCAAAATGGCCGCCATGCTACACAatggtggtggatgaggtgagtcGTTCTCCCCCCCTTTTTTTTGCTATGTAATGCATCTGGAAAAGCTCAATATAAATCCAATCTATTATTATGATTTATCATTAATTATGATGTTGAATGATTAAAGTGCAAGCTCGCTGCTTTATAATGTGCCCTATAGACTCACCATGGGACACTCTCACTGCACATGAGCACAGGCTTTTCTaccaattttttaaaatttttatttaGAAATAAAAAGATTTTACGTTTTTCTCAGTAAAACCCTCGTTTTAAATACACATTTTTTGCTTTACAGGTTATTTAGCGccatagaaataaaaaataaaatctttcaatttttttttttttttaaaaaggtttCTTCTTTATGGATTAAAAACATTTCCCCTTGTACATTCTTATAAAGGTATGTCATGTAATGTATACGAGGCAGGAGAGTTAAGAAgtttaacattatgttttctatCTGTGATAGACTTCTCCAATCTCCAGCGATGGACTGGGTGCCATTATCTTCACCATAAAATTGCTTTTTCATTTGGTTTTCAGTGAGCTTCTTTGATACGGCACCTGTAAGGCACCTAGCTAGCGAACTACTAGTGATTTGTTAcaggtatctagctagctaactactagTGATTTGTTAcaggtatctagctagctaactactagTGATTTGTTAcaggtacctagctagctaactactagTGATTTGTTAcaggtacctagctagctaactactagTGATTTGTTAcaggtatctagctagctaactgctcGCGTTTAATTTCTGCGGGTCATAATCTCCTATACAAACTAACAGCACTATGGTAAAAgtaaaaggggatacctagtcagttaaaCAACTGactgcattcaactgaaatgtcttccacatttaaccccttTGAATCACAGGTAGGCCTAAGTTTTGGTGGCAGCGTCATTTTAGAATGTCACCTGTACGTCACAGGTCAATCCAGACTACGAGAAAGCATTGAGTCAATAGTTATAAAATGGCAGGACTACTTTCATTGCGACAATATTTGTGTATATCTTTTGGTAAAGATGaatcaaattgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgggtgggtgtgtgtgcgtatgtgtctgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgcgtatgtgtctgtgtgtgcatgtgtgtgtgtgtgtgcgtgtgcatgtgtgtgtgtgcgtgtgtgtgtatgtgtgaatgtgtgtatgtgtgtgtgtgtgcatgcgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1717528 lncRNA downstream 15000 88342800 ~ 88343152 (-) True G1502167
TU1717514 lncRNA downstream 37386 88320247 ~ 88320766 (-) True G1502154
TU1717495 lncRNA downstream 61104 88286424 ~ 88297048 (-) False G1502135
TU1717491 lncRNA downstream 61104 88291602 ~ 88297048 (-) True G1502135
TU1717496 lncRNA downstream 61566 88291731 ~ 88296586 (-) True G1502136
TU1718003 lncRNA upstream 26005 88451510 ~ 88451770 (-) True G1502528
TU1718008 lncRNA upstream 47352 88472857 ~ 88473100 (-) True G1502533
TU1718013 lncRNA upstream 57346 88482851 ~ 88483685 (-) True G1502537
TU1718016 lncRNA upstream 59431 88484936 ~ 88535464 (-) True G1502539
TU1718039 lncRNA upstream 117383 88542888 ~ 88543273 (-) True G1502561
XM_021570146.2 mRNA downstream 112647 88233684 ~ 88245505 (-) True zgc:171566
XM_021570147.2 mRNA downstream 174395 88181683 ~ 88183757 (-) False LOC110494815
NM_001165127.1 mRNA downstream 182807 88162116 ~ 88175345 (-) False dnsl3
XM_036950920.1 mRNA downstream 199148 88144616 ~ 88159004 (-) True LOC110493297
XM_036950913.1 mRNA downstream 850564 87494104 ~ 87507588 (-) True LOC110495200
XM_036948442.1 mRNA upstream 11741 88437246 ~ 88600371 (-) True LOC110494809
LOC110493292 mRNA upstream 447415 88872920 ~ 88877452 (-) False LOC110493292
XM_036950931.1 mRNA upstream 476353 88901858 ~ 88907612 (-) False LOC118940510
XM_036950929.1 mRNA upstream 476353 88901858 ~ 88907675 (-) True LOC118940510
XM_036950943.1 mRNA upstream 1152067 89577572 ~ 89658569 (-) False pcbp4
TU1717411 other downstream 182806 88162278 ~ 88175346 (-) False dnsl3
TU1717412 other downstream 193610 88162278 ~ 88164542 (-) True dnsl3
TU1717031 other downstream 962317 87394780 ~ 87395835 (-) True G1501745
TU1716920 other downstream 1198908 87134058 ~ 87159244 (-) False G1501650
TU1716092 other downstream 1551621 86798065 ~ 86806531 (-) False LOC110493290
TU1718044 other upstream 124861 88550366 ~ 88552831 (-) True G1502566
TU1718207 other upstream 447270 88872775 ~ 88874526 (-) True LOC110493292
TU1719190 other upstream 1150456 89575961 ~ 89578851 (-) True pcbp4
TU1719292 other upstream 1260910 89686415 ~ 89686877 (-) True G1503624
TU1721876 other upstream 3689788 92115293 ~ 92170717 (-) True G1505789

Expression Profile