RNA id: TCONS_00047609


Basic Information

Item Value
RNA id TCONS_00047609
length 597
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_023983
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 15933411 ~ 16042941 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCACACATTCGAAGGCTCGCATTCTTCTGCCGTTTAGACTTTGGAGCCTTGCGTGTGTTGCAATCCTCATACCTGTAGCAGGAAGCGACAGAGGGAAAACTTCAGCCGGGTTTCAGATTAGCTCTTGTTGTGTTTCAGGTGAGCGTCCTCACTGACCAGGTTGAAGCTCAAGGAGAAAAAATCAGAGATCTGGAAAGCTCCCTGGAAGAACATCACCACAAACTAATTTCTACTGAGGAAATGCTCCAGCAGGAGCTCTTCAGTCGAACTTCACTGGAGACGCAGAAACTGGAACTGATGGATGAAGTTTCCTATCTGAAACTCAAGCTGGTCGGCATGGAGGAGGAACACAACCACATCGATGAAGAGGACAAACATCATAAAGCAGAGAGCGTGGTTAATCTAATTAGTGAACTACAGGAGCAGATGTGTAAATTCCAGGAGGAAATCAGCAATCGCATTCAGGAGCAACGGGCCCTCGAGAGCCTTGGGGACAGTGGCACACGTGAGGCTCTTGACCAGAGCCCCGATGTGGGCCTTGGTGCCTCGGATGCTGAGGACTGCAGCTGCCGCTGTAGAAGCGGAGGAGAGAAT

Function

GO:

id name namespace
GO:0007528 neuromuscular junction development biological_process
GO:0050808 synapse organization biological_process
GO:0048786 presynaptic active zone cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-54 Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP2 (PPFIA binding protein 2).

Ensembl:

ensembl_id ENSDART00000140047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049034 lncRNA upstream 387962 15540766 ~ 15609995 (+) True XLOC_023980
TCONS_00049033 lncRNA upstream 511177 15484273 ~ 15486780 (+) True XLOC_023977
TCONS_00049032 lncRNA upstream 871653 15100538 ~ 15126304 (+) True XLOC_023970
TCONS_00049209 lncRNA upstream 963373 14934372 ~ 15034584 (+) False XLOC_023969
TCONS_00049208 lncRNA upstream 1046785 14934372 ~ 14951172 (+) False XLOC_023969
TCONS_00049210 lncRNA downstream 59152 16066877 ~ 16075263 (+) False XLOC_023985
TCONS_00049211 lncRNA downstream 59152 16066877 ~ 16075816 (+) False XLOC_023985
TCONS_00049212 lncRNA downstream 62104 16069829 ~ 16075101 (+) False XLOC_023985
TCONS_00049213 lncRNA downstream 62914 16070639 ~ 16073478 (+) True XLOC_023985
TCONS_00047617 lncRNA downstream 167177 16174902 ~ 16179226 (+) False XLOC_023987
TCONS_00047605 mRNA upstream 55974 15933411 ~ 15941983 (+) False XLOC_023983
TCONS_00047604 mRNA upstream 92054 15841670 ~ 15905903 (+) True XLOC_023982
TCONS_00047601 mRNA upstream 197123 15647750 ~ 15800834 (+) False XLOC_023981
TCONS_00047610 mRNA downstream 35521 16043246 ~ 16045771 (+) True XLOC_023984
TCONS_00047611 mRNA downstream 72188 16079913 ~ 16129678 (+) False XLOC_023986
TCONS_00047612 mRNA downstream 72456 16080181 ~ 16129676 (+) False XLOC_023986
TCONS_00047613 mRNA downstream 90895 16098620 ~ 16105168 (+) False XLOC_023986
TCONS_00047614 mRNA downstream 90929 16098654 ~ 16129083 (+) False XLOC_023986
TCONS_00047600 other upstream 507290 15490212 ~ 15490667 (+) True XLOC_023979
TCONS_00047599 other upstream 508313 15487494 ~ 15489644 (+) True XLOC_023978
TCONS_00047595 other upstream 779848 15217824 ~ 15218109 (+) True XLOC_023973
TCONS_00047594 other upstream 863239 15134602 ~ 15134718 (+) True XLOC_023972
TCONS_00047593 other upstream 878227 15119597 ~ 15119730 (+) True XLOC_023971
TCONS_00047619 other downstream 178619 16186344 ~ 16188838 (+) False XLOC_023988
TCONS_00047637 other downstream 764066 16771791 ~ 16771908 (+) True XLOC_023997
TCONS_00047645 other downstream 1236848 17244573 ~ 17270566 (+) False XLOC_024003
TCONS_00047656 other downstream 1597754 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047663 other downstream 1854643 17862368 ~ 17878632 (+) False XLOC_024013

Expression Profile

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