RNA id: TU1721876


Basic Information

Item Value
RNA id TU1721876
length 813
RNA type TUCP
GC content 0.50
exon number 2
gene id G1505789
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 92115293 ~ 92170717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccaacgctggtccgaccaagctgactccacactccaagactgcttccatcacgtggactgggacatgtttcgtattgcgtcagacaacaacattgacgaatacgctgattcggtgtgcgagttcattagaacgtgcgttgaagatgtcgttcccatagcaacgattaaaacattccctaaccagaaaccgtggattgatggcagcattcgcgtgaaactgaaagcgcaaaccactgcttttaatcagggcaaggtgaccggaaacatgaccgaatacaagcagtgtaactattccctccgcaaggcaatcaaacaagctaagcgtcagtatagagacaaagtagaatctcaattcaacggctcagacacaagaggcatgtggcagggtctacagtcaatcacggattacaaaaagaaaaccggccccgtcacggaccaggatgtcttgctcccaggcagactaaataacttttttgccctctttgaggacaatacagtgccactgacacggcccgcaaccaaaacatgcggactctccttcactgcagccgacgtgaggaaaacatttaaacgtgtcaaccctcgcaaggctgcaggcccagacggcatccccagccgcgccctcagagcatgcgcagaccagctggctggtgtgttctcggacatattcaatcaatccctatcccagtctgttgttcccacatgcttcaagagggccaccaatgttcctgttcccaagaaagctaaggtaactgagctaaacgactttgagagactagtcaaggacattatcacctccaccctacctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1721873 lncRNA downstream 1644 92112895 ~ 92113649 (-) True G1505787
TU1721788 lncRNA downstream 44344 92070711 ~ 92070949 (-) True G1505713
TU1721770 lncRNA downstream 57869 92057212 ~ 92057424 (-) True G1505702
TU1721763 lncRNA downstream 64882 92049860 ~ 92050411 (-) True G1505696
TU1721735 lncRNA downstream 121536 91992083 ~ 91993757 (-) True G1505671
TU1721913 lncRNA upstream 773 92171490 ~ 92171748 (-) True G1505819
TU1721914 lncRNA upstream 3633 92174350 ~ 92174654 (-) True G1505820
TU1721916 lncRNA upstream 5114 92175831 ~ 92176218 (-) True G1505822
TU1721945 lncRNA upstream 43349 92214066 ~ 92214312 (-) True G1505848
TU1721947 lncRNA upstream 46371 92217088 ~ 92217394 (-) True G1505850
XR_005037111.1 mRNA downstream 95851 92017649 ~ 92019442 (-) True LOC118940513
XM_036948445.1 mRNA downstream 301108 91813129 ~ 91814185 (-) True LOC118940165
XM_036950955.1 mRNA downstream 305002 91713779 ~ 91810291 (-) False LOC110493304
XM_036950956.1 mRNA downstream 315615 91713779 ~ 91799678 (-) False LOC110493304
XM_036950954.1 mRNA downstream 418662 91665447 ~ 91696631 (-) True LOC110494829
XR_005036717.1 mRNA upstream 264202 92434919 ~ 92435933 (-) False LOC118940113
XR_005036715.1 mRNA upstream 264213 92434930 ~ 92435932 (-) False LOC118940113
XR_005036716.1 mRNA upstream 264375 92435092 ~ 92435921 (-) False LOC118940113
XR_005036718.1 mRNA upstream 264395 92435112 ~ 92435932 (-) True LOC118940113
XM_036950961.1 mRNA upstream 278541 92449258 ~ 92659032 (-) False LOC110504360
TU1719292 other downstream 2428416 89686415 ~ 89686877 (-) True G1503624
TU1719190 other downstream 2536442 89575961 ~ 89578851 (-) True pcbp4
TU1718207 other downstream 3240767 88872775 ~ 88874526 (-) True LOC110493292
TU1718044 other downstream 3562462 88550366 ~ 88552831 (-) True G1502566
TU1717937 other downstream 3689788 88358152 ~ 88425505 (-) False G1502489
TU1722385 other upstream 167336 92338053 ~ 92339443 (-) True G1506160
TU1722507 other upstream 325295 92496012 ~ 92498948 (-) True G1506231
TU1722835 other upstream 658193 92828910 ~ 92836424 (-) False LOC110494834
TU1722836 other upstream 658193 92828910 ~ 92835944 (-) True LOC110494834
TU1722873 other upstream 692385 92863102 ~ 92863974 (-) True G1506543

Expression Profile