Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047650 |
| length | 791 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_024004 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 17313568 ~ 17346929 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010606 | positive regulation of cytoplasmic mRNA processing body assembly | biological_process |
| GO:0033147 | negative regulation of intracellular estrogen receptor signaling pathway | biological_process |
| GO:0006417 | regulation of translation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0031047 | gene silencing by RNA | biological_process |
| GO:0048589 | developmental growth | biological_process |
| GO:0017148 | negative regulation of translation | biological_process |
| GO:0060213 | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | biological_process |
| GO:0048387 | negative regulation of retinoic acid receptor signaling pathway | biological_process |
| GO:0000288 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | biological_process |
| GO:0000932 | P-body | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030014 | CCR4-NOT complex | cellular_component |
| GO:0030015 | CCR4-NOT core complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0042974 | retinoic acid receptor binding | molecular_function |
| GO:0060090 | molecular adaptor activity | molecular_function |
| GO:0030331 | estrogen receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040915-1 | Predicted to enable estrogen receptor binding activity; molecular adaptor activity; and retinoic acid receptor binding activity. Acts upstream of or within developmental growth. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Human ortholog(s) of this gene implicated in holoprosencephaly. Orthologous to human CNOT1 (CCR4-NOT transcription complex subunit 1). |
| ensembl_id | ENSDART00000144339 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00047647 | lncRNA | upstream | 38434 | 17295708 ~ 17304386 (+) | True | XLOC_024003 |
| TCONS_00049037 | lncRNA | upstream | 382319 | 16958172 ~ 16960501 (+) | True | XLOC_024002 |
| TCONS_00049214 | lncRNA | upstream | 505871 | 16829884 ~ 16836949 (+) | True | XLOC_023998 |
| TCONS_00047632 | lncRNA | upstream | 826258 | 16516154 ~ 16516562 (+) | True | XLOC_023992 |
| TCONS_00047631 | lncRNA | upstream | 930388 | 16356226 ~ 16412432 (+) | True | XLOC_023991 |
| TCONS_00047651 | lncRNA | downstream | 1350 | 17345423 ~ 17346425 (+) | True | XLOC_024004 |
| TCONS_00049038 | lncRNA | downstream | 66044 | 17410117 ~ 17416453 (+) | True | XLOC_024005 |
| TCONS_00049215 | lncRNA | downstream | 158923 | 17502996 ~ 17510419 (+) | True | XLOC_024007 |
| TCONS_00049216 | lncRNA | downstream | 184708 | 17528781 ~ 17535916 (+) | True | XLOC_024008 |
| TCONS_00047664 | lncRNA | downstream | 518265 | 17862338 ~ 17892830 (+) | False | XLOC_024013 |
| TCONS_00047649 | mRNA | upstream | 1612 | 17339814 ~ 17341208 (+) | False | XLOC_024004 |
| TCONS_00047644 | mRNA | upstream | 32519 | 17244532 ~ 17310301 (+) | False | XLOC_024003 |
| TCONS_00047646 | mRNA | upstream | 33798 | 17244573 ~ 17309022 (+) | False | XLOC_024003 |
| TCONS_00047643 | mRNA | upstream | 390930 | 16945348 ~ 16951890 (+) | True | XLOC_024001 |
| TCONS_00047639 | mRNA | upstream | 401201 | 16880990 ~ 16941619 (+) | False | XLOC_024000 |
| TCONS_00047652 | mRNA | downstream | 61128 | 17405201 ~ 17419097 (+) | False | XLOC_024005 |
| TCONS_00047653 | mRNA | downstream | 79442 | 17423515 ~ 17471260 (+) | True | XLOC_024006 |
| TCONS_00047654 | mRNA | downstream | 245833 | 17589906 ~ 17613025 (+) | False | XLOC_024009 |
| TCONS_00047655 | mRNA | downstream | 246022 | 17590095 ~ 17611304 (+) | False | XLOC_024009 |
| TCONS_00047657 | mRNA | downstream | 345492 | 17689565 ~ 17825514 (+) | True | XLOC_024010 |
| TCONS_00047645 | other | upstream | 72254 | 17244573 ~ 17270566 (+) | False | XLOC_024003 |
| TCONS_00047637 | other | upstream | 570912 | 16771791 ~ 16771908 (+) | True | XLOC_023997 |
| TCONS_00047619 | other | upstream | 1153982 | 16186344 ~ 16188838 (+) | False | XLOC_023988 |
| TCONS_00047600 | other | upstream | 1852153 | 15490212 ~ 15490667 (+) | True | XLOC_023979 |
| TCONS_00047599 | other | upstream | 1853176 | 15487494 ~ 15489644 (+) | True | XLOC_023978 |
| TCONS_00047656 | other | downstream | 261406 | 17605479 ~ 17608731 (+) | True | XLOC_024009 |
| TCONS_00047663 | other | downstream | 518295 | 17862368 ~ 17878632 (+) | False | XLOC_024013 |
| TCONS_00047672 | other | downstream | 753674 | 18097747 ~ 18097861 (+) | True | XLOC_024017 |
| TCONS_00047675 | other | downstream | 1138833 | 18482906 ~ 18489006 (+) | True | XLOC_024022 |
| TCONS_00047695 | other | downstream | 1751229 | 19095302 ~ 19111808 (+) | False | XLOC_024035 |
