RNA id: TU1722961


Basic Information

Item Value
RNA id TU1722961
length 263
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1506614
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93029833 ~ 93031396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactaggtatccccctttacaactgactaggtatccccctttacaactgactaggtatccccctttacaactgactaggtatcccactttacaactgactaggtatccctttacaacagactaggtatacctttacaacagactaggtatcccactttacaactgactaggtatccccctttacaactgactaggtatccccctttacaactgactaggtatccccctttacaactgactaggtatccctttacaactgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1722963 lncRNA upstream 11436 93008622 ~ 93018397 (+) True G1506616
TU1722964 lncRNA upstream 14408 93013567 ~ 93015425 (+) True G1506617
TU1722958 lncRNA upstream 16402 93000489 ~ 93013431 (+) False G1506612
TU1722956 lncRNA upstream 18198 93007234 ~ 93011635 (+) True G1506612
TU1722926 lncRNA upstream 63294 92961441 ~ 92966539 (+) True G1506590
TU1723037 lncRNA downstream 12245 93043641 ~ 93044172 (+) True G1506649
TU1723000 lncRNA downstream 50950 93082346 ~ 93083564 (+) False G1506633
TU1722997 lncRNA downstream 51199 93082595 ~ 93084882 (+) False G1506633
TU1722991 lncRNA downstream 51580 93082976 ~ 93083564 (+) True G1506633
TU1723015 lncRNA downstream 54384 93085780 ~ 93087724 (+) False G1506635
XM_036950959.1 mRNA upstream 714761 92282926 ~ 92315072 (+) False LOC110504503
XM_036948446.1 mRNA upstream 782737 92246394 ~ 92247096 (+) True LOC118940166
XR_005037110.1 mRNA upstream 1011633 92015537 ~ 92018200 (+) False LOC118940512
XM_036950958.1 mRNA upstream 1017866 91915402 ~ 92011967 (+) False LOC110519238
XM_036950971.1 mRNA downstream 26302 93057698 ~ 93078808 (+) True LOC118940514
XM_036950972.1 mRNA downstream 68745 93100141 ~ 93131637 (+) True LOC110494838
XM_036950973.1 mRNA downstream 120830 93152226 ~ 93183983 (+) True LOC110511384
XM_021570164.2 mRNA downstream 195123 93226519 ~ 93242451 (+) True LOC110494840
XM_036950976.1 mRNA downstream 262667 93294063 ~ 93433617 (+) False stab1
TU1722714 other upstream 162799 92866206 ~ 92867034 (+) True G1506406
TU1722049 other upstream 579892 92448586 ~ 92449941 (+) False G1505924
TU1722007 other upstream 709056 92319545 ~ 92320777 (+) True G1505894
TU1721951 other upstream 739886 92285055 ~ 92289947 (+) False LOC110504503
TU1718950 other upstream 2806174 90221545 ~ 90223659 (+) True G1503337
TU1723335 other downstream 545421 93576817 ~ 93577604 (+) True G1506889
TU1724209 other downstream 1318817 94350213 ~ 94351111 (+) False G1507612
TU1724211 other downstream 1318817 94350213 ~ 94351111 (+) True G1507612
TU1724993 other downstream 1642167 94673563 ~ 94673937 (+) True G1508290
TU1725405 other downstream 2050008 95081404 ~ 95082050 (+) True G1508614

Expression Profile