Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047656 |
| length | 684 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_024009 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 17589906 ~ 17613025 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0006661 | phosphatidylinositol biosynthetic process | biological_process |
| GO:0000306 | extrinsic component of vacuolar membrane | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0070772 | PAS complex | cellular_component |
| GO:0005774 | vacuolar membrane | cellular_component |
| GO:0010008 | endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040912-82 | Predicted to be involved in phosphatidylinositol biosynthetic process and positive regulation of kinase activity. Predicted to be located in endosome and membrane. Predicted to be part of PAS complex. Predicted to be active in endosome membrane. Predicted to be extrinsic component of vacuolar membrane. Human ortholog(s) of this gene implicated in striatonigral degeneration. Orthologous to human VAC14 (VAC14 component of PIKFYVE complex). |
| ensembl_id | ENSDART00000138038 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049216 | lncRNA | upstream | 69563 | 17528781 ~ 17535916 (+) | True | XLOC_024008 |
| TCONS_00049215 | lncRNA | upstream | 95060 | 17502996 ~ 17510419 (+) | True | XLOC_024007 |
| TCONS_00049038 | lncRNA | upstream | 189026 | 17410117 ~ 17416453 (+) | True | XLOC_024005 |
| TCONS_00047651 | lncRNA | upstream | 259054 | 17345423 ~ 17346425 (+) | True | XLOC_024004 |
| TCONS_00047650 | lncRNA | upstream | 261406 | 17342820 ~ 17344073 (+) | False | XLOC_024004 |
| TCONS_00047664 | lncRNA | downstream | 253607 | 17862338 ~ 17892830 (+) | False | XLOC_024013 |
| TCONS_00049217 | lncRNA | downstream | 498661 | 18107392 ~ 18250076 (+) | True | XLOC_024018 |
| TCONS_00049218 | lncRNA | downstream | 700584 | 18309315 ~ 18314927 (+) | False | XLOC_024019 |
| TCONS_00049219 | lncRNA | downstream | 700628 | 18309359 ~ 18314927 (+) | True | XLOC_024019 |
| TCONS_00049220 | lncRNA | downstream | 750297 | 18359028 ~ 18361288 (+) | True | XLOC_024020 |
| TCONS_00047653 | mRNA | upstream | 134219 | 17423515 ~ 17471260 (+) | True | XLOC_024006 |
| TCONS_00047652 | mRNA | upstream | 186382 | 17405201 ~ 17419097 (+) | False | XLOC_024005 |
| TCONS_00047648 | mRNA | upstream | 258550 | 17313568 ~ 17346929 (+) | False | XLOC_024004 |
| TCONS_00047649 | mRNA | upstream | 264271 | 17339814 ~ 17341208 (+) | False | XLOC_024004 |
| TCONS_00047644 | mRNA | upstream | 295178 | 17244532 ~ 17310301 (+) | False | XLOC_024003 |
| TCONS_00047657 | mRNA | downstream | 80834 | 17689565 ~ 17825514 (+) | True | XLOC_024010 |
| TCONS_00047658 | mRNA | downstream | 238323 | 17847054 ~ 17849574 (+) | False | XLOC_024011 |
| TCONS_00047659 | mRNA | downstream | 240492 | 17849223 ~ 17849435 (+) | True | XLOC_024011 |
| TCONS_00047660 | mRNA | downstream | 252067 | 17860798 ~ 17861696 (+) | False | XLOC_024012 |
| TCONS_00047661 | mRNA | downstream | 252231 | 17860962 ~ 17861695 (+) | True | XLOC_024012 |
| TCONS_00047645 | other | upstream | 334913 | 17244573 ~ 17270566 (+) | False | XLOC_024003 |
| TCONS_00047637 | other | upstream | 833571 | 16771791 ~ 16771908 (+) | True | XLOC_023997 |
| TCONS_00047619 | other | upstream | 1416641 | 16186344 ~ 16188838 (+) | False | XLOC_023988 |
| TCONS_00047600 | other | upstream | 2114812 | 15490212 ~ 15490667 (+) | True | XLOC_023979 |
| TCONS_00047599 | other | upstream | 2115835 | 15487494 ~ 15489644 (+) | True | XLOC_023978 |
| TCONS_00047663 | other | downstream | 253637 | 17862368 ~ 17878632 (+) | False | XLOC_024013 |
| TCONS_00047672 | other | downstream | 489016 | 18097747 ~ 18097861 (+) | True | XLOC_024017 |
| TCONS_00047675 | other | downstream | 874175 | 18482906 ~ 18489006 (+) | True | XLOC_024022 |
| TCONS_00047695 | other | downstream | 1486571 | 19095302 ~ 19111808 (+) | False | XLOC_024035 |
| TCONS_00047707 | other | downstream | 1880819 | 19489550 ~ 19492620 (+) | True | XLOC_024042 |
