Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047668 |
| length | 1542 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 6 |
| gene id | XLOC_024014 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 17920361 ~ 17925146 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072384 | organelle transport along microtubule | biological_process |
| GO:1903744 | positive regulation of anterograde synaptic vesicle transport | biological_process |
| GO:0032418 | lysosome localization | biological_process |
| GO:0031224 | intrinsic component of membrane | cellular_component |
| GO:0030672 | synaptic vesicle membrane | cellular_component |
| GO:0099078 | BORC complex | cellular_component |
| GO:0005764 | lysosome | cellular_component |
| GO:0098574 | cytoplasmic side of lysosomal membrane | cellular_component |
| GO:0005873 | plus-end kinesin complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-041010-83 | Predicted to be involved in lysosome localization; organelle transport along microtubule; and positive regulation of anterograde synaptic vesicle transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Predicted to be active in cytoplasmic side of lysosomal membrane and synaptic vesicle membrane. Predicted to be intrinsic component of membrane. Orthologous to human BORCS5 (BLOC-1 related complex subunit 5). |
| ensembl_id | ENSDART00000093358 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00047664 | lncRNA | upstream | 27838 | 17862338 ~ 17892830 (+) | False | XLOC_024013 |
| TCONS_00049216 | lncRNA | upstream | 384752 | 17528781 ~ 17535916 (+) | True | XLOC_024008 |
| TCONS_00049215 | lncRNA | upstream | 410249 | 17502996 ~ 17510419 (+) | True | XLOC_024007 |
| TCONS_00049038 | lncRNA | upstream | 504215 | 17410117 ~ 17416453 (+) | True | XLOC_024005 |
| TCONS_00047651 | lncRNA | upstream | 574243 | 17345423 ~ 17346425 (+) | True | XLOC_024004 |
| TCONS_00049217 | lncRNA | downstream | 182246 | 18107392 ~ 18250076 (+) | True | XLOC_024018 |
| TCONS_00049218 | lncRNA | downstream | 384169 | 18309315 ~ 18314927 (+) | False | XLOC_024019 |
| TCONS_00049219 | lncRNA | downstream | 384213 | 18309359 ~ 18314927 (+) | True | XLOC_024019 |
| TCONS_00049220 | lncRNA | downstream | 433882 | 18359028 ~ 18361288 (+) | True | XLOC_024020 |
| TCONS_00049221 | lncRNA | downstream | 818875 | 18744021 ~ 18745029 (+) | True | XLOC_024027 |
| TCONS_00047662 | mRNA | upstream | 27957 | 17862338 ~ 17892711 (+) | False | XLOC_024013 |
| TCONS_00047665 | mRNA | upstream | 40140 | 17870799 ~ 17880528 (+) | False | XLOC_024013 |
| TCONS_00047666 | mRNA | upstream | 40142 | 17871089 ~ 17880526 (+) | True | XLOC_024013 |
| TCONS_00047660 | mRNA | upstream | 58972 | 17860798 ~ 17861696 (+) | False | XLOC_024012 |
| TCONS_00047661 | mRNA | upstream | 58973 | 17860962 ~ 17861695 (+) | True | XLOC_024012 |
| TCONS_00047669 | mRNA | downstream | 278 | 17925424 ~ 17934675 (+) | True | XLOC_024015 |
| TCONS_00047670 | mRNA | downstream | 77222 | 18002368 ~ 18055064 (+) | False | XLOC_024016 |
| TCONS_00047671 | mRNA | downstream | 100268 | 18025414 ~ 18039501 (+) | True | XLOC_024016 |
| TCONS_00047673 | mRNA | downstream | 511155 | 18436301 ~ 18445279 (+) | True | XLOC_024021 |
| TCONS_00047674 | mRNA | downstream | 549886 | 18475032 ~ 18496410 (+) | False | XLOC_024022 |
| TCONS_00047663 | other | upstream | 42036 | 17862368 ~ 17878632 (+) | False | XLOC_024013 |
| TCONS_00047656 | other | upstream | 311937 | 17605479 ~ 17608731 (+) | True | XLOC_024009 |
| TCONS_00047645 | other | upstream | 650102 | 17244573 ~ 17270566 (+) | False | XLOC_024003 |
| TCONS_00047637 | other | upstream | 1148760 | 16771791 ~ 16771908 (+) | True | XLOC_023997 |
| TCONS_00047619 | other | upstream | 1731830 | 16186344 ~ 16188838 (+) | False | XLOC_023988 |
| TCONS_00047672 | other | downstream | 172601 | 18097747 ~ 18097861 (+) | True | XLOC_024017 |
| TCONS_00047675 | other | downstream | 557760 | 18482906 ~ 18489006 (+) | True | XLOC_024022 |
| TCONS_00047695 | other | downstream | 1170156 | 19095302 ~ 19111808 (+) | False | XLOC_024035 |
| TCONS_00047707 | other | downstream | 1564404 | 19489550 ~ 19492620 (+) | True | XLOC_024042 |
| TCONS_00047732 | other | downstream | 1849413 | 19774559 ~ 19774675 (+) | True | XLOC_024053 |
