RNA id: TCONS_00047675


Basic Information

Item Value
RNA id TCONS_00047675
length 899
RNA type processed_transcript
GC content 0.55
exon number 3
gene id XLOC_024022
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18475032 ~ 18496410 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAAACTGCAAGTGTGGTGTTGAGGACCATGACGTGCAGCTGGAGACTGAAGAGAGCAAGAAAGTTGGGAAGCTTTTTGAGGACACCAAGTACACGGGACTCATAGCCAAGCTGAAGAGAGATGGCATTCCTTCTTATAGAAGCAACCAGTTCACCGTCTCCGTCCCAGCGGCTTCCCTCAGCAGTGCTACTGCTGTTCCTGCTGGGGTTTTCATCCCAGGCTCCAACCAGACCTTCAGCTCCATCACTCCACCTGGTCATGCCCCGTCTGCTGCTGCTGCAGGCTCTGCGGTACATGGAGCTTCTTCCTCCAGAGCAGCGGCCCATCGCTGGTACAACAGGAGCAGATTACCGTAAGAAGCAGATGGCCAAACAGCTTCCAGACCATGACCAAGACCCCGAGCGCTGCCATGAGCTTTCACCCGGAGAGATCAAGCAAATGCAGCAGTATGTGCGAAAATACAAGGACGAGGCGCTGGGTATAGGTGACATCACCCTGCCTGAAGAGATGGGGCAGGTGGGTGCAGCTGGAGATAAAGGGCCTCAAGGAGTTGGTGCCGGAGGAAAGCCTGGTGCCGGTACAACAGGGGCTTCAGGAGACAAAGGTGATGCTGTTGCTACAGTGGGGAAAGTTGGTGCCCCAGGGGCTGCTGGGACATCAGCCGGTGGACCTGCTGGTAACTTTTCCTGCCACCAGTGCCAGAAGCCCATGAAGAAGGGTGAGCCTGCTGTGTTTGCAGAGAGGGCCGGTTATGATAAACTCTGGCACCCAGCATGTTTCGTGTGCTGCACCTGCACTGAGCTTCTGGTGGACATGATCTATTTCTGGAAAAAGGGTCAGCTTTACTGTGGCCGTCATTATGGAGACAGTGAAAAACCAAGATGTGGAGGCTGTGAT

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040718-59 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within regulation of cell population proliferation. Predicted to be located in cytoplasm and focal adhesion. Orthologous to human TES (testin LIM domain protein).

Ensembl:

ensembl_id ENSDART00000152103

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049220 lncRNA upstream 121618 18359028 ~ 18361288 (+) True XLOC_024020
TCONS_00049218 lncRNA upstream 167979 18309315 ~ 18314927 (+) False XLOC_024019
TCONS_00049219 lncRNA upstream 167979 18309359 ~ 18314927 (+) True XLOC_024019
TCONS_00049217 lncRNA upstream 232830 18107392 ~ 18250076 (+) True XLOC_024018
TCONS_00047664 lncRNA upstream 590076 17862338 ~ 17892830 (+) False XLOC_024013
TCONS_00049221 lncRNA downstream 255015 18744021 ~ 18745029 (+) True XLOC_024027
TCONS_00047684 lncRNA downstream 395672 18884678 ~ 18885569 (+) True XLOC_024029
TCONS_00049222 lncRNA downstream 431537 18920543 ~ 18924391 (+) False XLOC_024031
TCONS_00049223 lncRNA downstream 431615 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047686 lncRNA downstream 432819 18921825 ~ 18924391 (+) True XLOC_024031
TCONS_00047673 mRNA upstream 37627 18436301 ~ 18445279 (+) True XLOC_024021
TCONS_00047670 mRNA upstream 427842 18002368 ~ 18055064 (+) False XLOC_024016
TCONS_00047671 mRNA upstream 443405 18025414 ~ 18039501 (+) True XLOC_024016
TCONS_00047669 mRNA upstream 548231 17925424 ~ 17934675 (+) True XLOC_024015
TCONS_00047668 mRNA upstream 557760 17920668 ~ 17925146 (+) True XLOC_024014
TCONS_00047676 mRNA downstream 67582 18556588 ~ 18561795 (+) True XLOC_024023
TCONS_00047677 mRNA downstream 74470 18563476 ~ 18577586 (+) False XLOC_024024
TCONS_00047678 mRNA downstream 75260 18564266 ~ 18575505 (+) True XLOC_024024
TCONS_00047679 mRNA downstream 94871 18583877 ~ 18679071 (+) False XLOC_024025
TCONS_00047680 mRNA downstream 98332 18587338 ~ 18679051 (+) True XLOC_024025
TCONS_00047672 other upstream 385045 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 604274 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047656 other upstream 874175 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047645 other upstream 1212340 17244573 ~ 17270566 (+) False XLOC_024003
TCONS_00047637 other upstream 1710998 16771791 ~ 16771908 (+) True XLOC_023997
TCONS_00047695 other downstream 606296 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047707 other downstream 1000544 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047732 other downstream 1285553 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 2103477 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 2114890 20603896 ~ 20604012 (+) True XLOC_024067

Expression Profile

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