RNA id: XM_036951457.1


Basic Information

Item Value
RNA id XM_036951457.1
length 4156
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110515393
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 589742 ~ 621439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTAAATATTCTCAATTTATTTGCAATGAGGGAAGGCCTGCACTGCCTGAACATTCAAACTAGTTGAGGGAATAGTTTACAGTGAACAAATTgtcttccccccctctttctaTTTGCAATAATTTAAAAAGCAAGAAACACGCTCAAGGCAATCTAGTCTTTTCAACCAAGTCGTTGGTCTTTTTAGTGTTGAATAGCCATGCAGGTTTAATAAGAGAGAGAAGGCGGTAACTaacagctaatgttagcttgatGACTTCTTGCCTTTGGACATACAGTATTTTTGTCATTAAGAAACATTACCGAGTGATTATTAACCCTGGCCACCGAGTGGAAGAGAAGTTAACCGGTGTCTGAAAAGATGATTATTGAAAACCTAGATTCATTGAAAACGTGGCTTTTTAAAACCCTCGAACCAATTTGTGATGCGGATCCATCTGCCCTCGCTAAATACGTCGTTGCCTTGGTGAAGAAAGACAAAAGTGAGACGGAACTCAAAGCTCTTTGTGTCGACCAGTTGGACGTATTTCTACAGAAAGAGACGCAGACCTTTGTCGATAGACTCTTTGAAGCCGTCAACTCCAAAAGCTACCTACCTCAGCAGGACCATCAGCCAGGTTCCGCGGGCAAAGCGGAGGGTCACCTGACCAGGACGGACAAAGACGACCAGAGGAAAGACGAGCCGAGTCGCGAGGAGGACCGGGACAAGAAGTTCTCCAGGAGAGTGAACTACAGCCCCCCGTCCAGCTCCCgctacagtagagacagcagACGAGGGGATGACCGTAAAAGGGACGACCGTACCAGGAAACGGAACGATTACGACCGCATCCCCCCGAGACGGGACTCGTACCGGGACCGTTACAACCGGAGGAGGGGCCGTAGCTACAGCCGCAGTAGGAGCAGGAGCAAGGACCGGGCCAGGGaccgggagagagacagagaccgcgGTAGCAGGAGTCACAGCAGGAGCCACTCCAAGAGCAGAGAGCGGGATGCTGGGAGGTCAAAGTACGAGCCCGATCGAGGAGACCGGGGGACGGAGGTTGGAGCTGGAGAAGGCCTCCTGCCGATCCCCACGGCAACCGCCACGTTCCCCGTGCCGACCCTCAGCAGCACCATCACGGTGATCGCCCCTCAAGGTAACCACAGCAACAGCATCGCCTCGGTGACGGACAGCTGGTCGGACTTCCACCCGGATCAGTCACTGGACCGGCCCCTTCCGCCACAGAGGAAACGTTGCCGTGACTACGACGAGAAAGGCTTCTGTATGCGCGGGGACATTTGCCCGTTCGACCACGGTATCGATCCAGTGGTGGTGGAGGACGTTAATCTACCTAACATGTTCCAAGCCCCTCCCCCTATCCCGGGGGTCGCCCAGCCCCCTCCCGGCCTACCGCCCCCGCCAGGACCTCCCCCTCTCATGACGCCACCTCCCGTCAACCTCCGTCCCCCTGTGCCCCTGACAGGCAGCCTGCCGCCCGGCCTGCCGCCCAGCCTGCCGCCAGGTCCCCCTCACCAGGCTTCAGGGATGGATGCCCCTCCTAGCTCCATCGCCAACTCTGTTCCCACTATTGTAACCACAGGGACACGACCCTCCATCCCCCAGCCCCCGGCTCCTCTCTTCCCACcagGCCAGTATGACCCTGACATGTATAACCCTGAGGATCCCAGCCTCACCAACACCTCCAGACCAGTGTATCGCCACAGAGTCAACGCCCAGAGACCCAACCTCATAGGACTGACTATGGGGGAGGACCTGCCTCACAGAGACAGAGATCAGATGCCCAACAGAATGAGGATTGTTCTGGACTCGGCCTCCAGGAAGAGATCTGCTGTCTCACACCACGGAGCAATGCTCCCCAAGAAACCCTGGTCCGacaaACCTAACTTCAACCAGCAGAACCTCCAGGGTGGGTTCCACAACAAGAACcctcagaaccagaaccagaaggCTCCGTTTGGGTCAAACACCAAGCTGTCGGTCCTTCAGATCCCCCAGGGACTCAACAACATCTCCAAGCTTAACCAACACTTCAGCAAGTTCGGGACTATCGTCAACCTGCAGGTAACCTATGGTAATGACCCGGAGGGGGCCCTGATCCAGTTCGACAGTCACGAGGAGGCTAAGCGTGCCCTGCAGAGTCCTGAGGCTGTTCTCAACAACCGCTTCATTAGAGTCCTCTGGCACTGTGAGGACGAGATGGGACAGCAGGGAATGGGACAGCAGGGAAtgggacagcagggacagcagggaatgggacagcagggacagcaaCACCATCAACCACAGCCACTCATGCAGGTGCAGCAGCCAGCCACTAGTCTGAAACAGTCCGTCAAAGACCGTCTGGGCCCTCTGCCTGCCGACTGCTCAGAGCCCAACCAAGACTCTCGTGTTGCCTCACAGAATGACTTTAAATCCAACCTATCAATGAAGGAGAGGCTGGGCTTCGCCTCTAAACCAGGAAGTACCCCTAGTGGACCGGCAGGAAAGgTGTTCTCCACCTCTACGGGGCTGACTAAGACAGTGTACAACATGGCTGCTCTGAAAGCAGCTCAGAAGACGGCTCTGTTCGCTGGGGTCACTGCTACAGAGGAGGCTATGAAGAATAAACagGAAGCCCTGCGGCTCCAACAGGAAATGAGGAAGAAGAAGCAGGAAATCCTGGAGAAACACATCGAGACTCAGAAGCTGTTGATCTGTAAACTGGAGAAGAACAAGACGATGAAGGCAGGAGACAAGGCGGTGATCATGACAACGCTGGGAACGCTGACCAAGAGTATTACCAAACTACAGCAAGAGATTAAAGGACTCTCGAACCCTTCGGGAGTACGGGGGGCGCCCAAGAGCAAggctcaggctcAGAAGGAGTTGCTGGACACAGAACTGGACCTGTATAAGAAGACCCAGTCTGGAGAAGATACCGTTCAGCTGAAGATCAGATACACACAACTACAGTTAGAGGCAGCTAAGAGGGGGATCCTGGCTCCAGGGCGGGGCAGAGGGGCCCATGCTCGAGGCCGTGGGGGcctgagaggcagggggaggggaaggggttgCCGGGGGAGGGGTCTCCCTGTCCACTCTACAGTAGACCACAGACCCAGAGCCCTGGAGATCTCTGGCTTTACTGAGACGGACCTCCAGGACCTACTGCCACACTTTGCTCAATTTGGAGAGTTGGAGGACTGTCAGATAGACGAGACATCCTGTCTGGCTGTTATCACCTACAGGAGCAGACCAGAGGCTGAACAGGCTGCGCTACACAGTGTCCGTCTGAACGGCAGTGACCTGCGTCTGTCCTGGCATAAGCCTGCCGTCTCCCTGACCTCCCAGGAGCCTGATGAGCAGGAGACGGATCATGACGAGGTGAAGTTCCAGGAAGAGTCGCTGATTGATGATGCGTTGCTCCAGGACGACGACGAGGAGGATGACGACAACGAACCCCGCCCCTGGCGCAGATGAAGACGGCCCCTGATTGGACGAAATGCTaacgcaattttttttttttttttttttgctttgcaGTTTCTGATTGGCTGTTTTACTAGACGCATTTCACAATAGGTCAGAACCTAAACAGGTAATTCATTCTGTTGTGGCGATTCAGAAGATTACTAGACAAAGTCACGTGGGAGTTTCATGTAAATATAGTGGTTATTTTTCTTCCTACTTTTAATTTGTAAAAGTAGTTTAACATGAAGATtggtacagtttttttttttaaataattatttGCTTATTGGATTGTAATGAAAAATGATACTAGATTACTtttagggggaaaaaaacaactgtCGTTGACTGATCAGATCAAAATGAGGCCATAAAGAGCCGTTGTGTTGAAACGCCTGATGTTTATTGACGGTGAGAGTCGCAGAACGACGGGGGGGAAGAGTTTTTTTTTGACTGTGTGATATTAGATTTGtttcttgtgtaaatattttctgTGTGGGTTTTAATGATTTGTATGACCGCTTTGCTTCGGGATTCTTTCTTGGATTTATTTTTGAAatgtcattaaaaaaataaaataaagactttcaaatggtcaaaaataaaaataaatcagctgGGGAAAAAAAAAACCCTGCAGCTGTGATGAAACAAAACCAGCTGATAAAATAAAGaccattttaaaaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1726119 lncRNA upstream 7657 581568 ~ 582085 (+) True G1509065
TU1726050 lncRNA upstream 11157 542747 ~ 578585 (+) True G1509020
TU1726114 lncRNA upstream 13596 575615 ~ 576146 (+) True G1509061
TU1726113 lncRNA upstream 20503 568725 ~ 569239 (+) True G1509060
TU1726107 lncRNA upstream 40744 544894 ~ 548998 (+) True G1509056
TU1726281 lncRNA downstream 9991 631430 ~ 631687 (+) True G1509175
TU1726302 lncRNA downstream 90678 712117 ~ 715516 (+) False G1509188
TU1726303 lncRNA downstream 90678 712117 ~ 715516 (+) True G1509188
TU1726326 lncRNA downstream 146382 767821 ~ 768025 (+) True G1509205
TU1726328 lncRNA downstream 149343 770782 ~ 771014 (+) True G1509207
XM_036951447.1 mRNA upstream 19613 554930 ~ 570129 (+) False LOC110515805
XM_036951448.1 mRNA upstream 19613 554930 ~ 570129 (+) False LOC110515805
XM_036951450.1 mRNA upstream 19613 554930 ~ 570129 (+) False LOC110515805
XM_036951451.1 mRNA upstream 19613 554930 ~ 570129 (+) False LOC110515805
XM_036951452.1 mRNA upstream 19613 554930 ~ 570129 (+) False LOC110515805
XM_036951463.1 mRNA downstream 153411 774850 ~ 784873 (+) True LOC118941073
XM_036951464.1 mRNA downstream 168347 789786 ~ 792686 (+) False LOC110495331
LOC118941054 mRNA downstream 232931 854370 ~ 859799 (+) True LOC118941054
XM_036951393.1 mRNA downstream 1109785 1731224 ~ 1732090 (+) True LOC118941055
XM_036951475.1 mRNA downstream 1756494 2377933 ~ 2434726 (+) False tdrd3
TU1726036 other upstream 144865 442803 ~ 444877 (+) False G1509015
TU1726336 other downstream 159350 780789 ~ 781203 (+) True G1509212
TU1726988 other downstream 766592 1388031 ~ 1389178 (+) True G1509697
TU1727296 other downstream 1060853 1682292 ~ 1682858 (+) True G1509914
TU1727592 other downstream 1756638 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 1758196 2379635 ~ 2400927 (+) True tdrd3

Expression Profile