RNA id: XM_036951472.1


Basic Information

Item Value
RNA id XM_036951472.1
length 3497
RNA type mRNA
GC content 0.55
exon number 15
gene id tdrd3
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2377933 ~ 2453770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAACTTTGACGTCTCTTCCAACGGGAGGTCATTTGTTTTTAGTCCGGCAAAACGCTAAAAATATCCGGCTAAACTCATTGATTATCGGATGAATTATTAAAGATTAAAAAAACAATGGATAATCCACAAATTAAATAGTTAATCGACTATATTTGCATTTgatactttatttttttatttgaaagaaAATGGCTGAAATCAACTTAGCCCTCACTAAAGAAGGCTGGTACCTTACAGACGAAGGAATAGAGGAGTTGAAAGGCACTTCTGAGAACCCCTCAGCTAATTACCTTATTCGCGTTGCACTCAATAGTGACCTGAGGCCTATTGGCAGGAAGTTTCTCCCTGTGGACATCAACAGTGGCCGGGTGGAGAAGTTGGAGGGTCCGTGTGTGCTGCAGGTTCAGAAGGTGAGGAACGTGTCGGCTCCCAAGGACAACGAGGAGTCTCAGGGAGCCCCCAGGATGCTGAGGCTGCAGATGACAGACGGACACACCAACGCTGTGGGCCTCGAGTTCAcacacctgtcccagatcagcCTGAACACCCCTCCAGGAACCAAGGTGAAGGTCCTTGGTACGGTCCAGGTGAAGAATGGCATTCTGCTTCTGGACGACTCCAAGATCTCCGTCCTCGGAGGGGAGGTCGACCACATGATGGAGAAATGGGAACTGCAaaggAGCTTGGCCAAACACAGCAGGAGTAACATCGGAAGAGAAGGTGGAGCCCCTCCCTTCGTGCCCTTCGGACAGAAGTGTGTAAGGAATGAGGAAGTGGACTCCAGAGAGCTGGACACGAGGAAGACTCTTGTCAGCACCAGTGTGGTGAAGACGGCTGACGAGAACGAAGAGTTTGAGAAGCAGAGGCTAGCAGCCATCGCTGAGGTGGCCAAGAACAaagagGGAACTCGGACGTTTGGCGGCGGAGGCAATGCTGGCGGGAACCTCGTTAATACAGGCGGTCGGGACcgacgaggaggaggagaccgAGGAGACAGGGACTCGTACCGgcagagacgagaggagaggacggaGGAGTCCAGCCGTCCAGAGGGAAACTACAGAGAGCTCGGGAGTTACCGGGAACAACCAAACTACCGGGAACTAGGAAATTACCGCGAGCTGGTGGATGAGCGGGCCCTAAGGGACATTATGGAGATGGGGTTTGATAAGGAGGATGCTCGTCAGGCCCTgatggacaacaacaacaacatggaggtgGCTCTCAACAGTCTACTGACGGGGACCTtcaaaccccccccaccccctgagGAACCCAGCAGACCCCCACCCAGAGACAGAGGAAGGGGTCGTGGCCGGGGTCGGGGTCGGTCCAGTAGGTTTGGgggtgaggatgaggaggagggagcaggaggaagaCCGTCAGGACCCAGCACTCTGTTTGACTTCCTGGAATCCAAGATGGGGAGCTTCTCCCTACAAGAGCCAAAGAGCCAGTCCTCCCAGAGGCATCACGAGGGTAAGATGACGTTCCCTCCTAACAGCCAGTCCCAGGACAGGTACCCCCAACGCAGCGACAGGTCAGACGGTAGGAACGACTGGTCCAGGAACGACAGATCACGGAAGGAGAGAAACGAGAGGAACGACAGATCAGACTTCAGGAACGACAGGAACGACAGACCACCTCGTTTCCAGAGGGATAGTGACAAGGATTTCCCTAAACCTGGCCACGACCCCTCCATCGCCACATCCACCccttccccagccccagctccagcagGGAGCCGGCAGGGCCAGGAGAGAGCCCAGGACAGAGGCCAGGAAAGGGGCCAGACACAGGAGAAGGCTCCtcctggaggtggaggagggtcagagaggtggagagaggcccAGCATGAGAGACAAACAGCCAGGGAGGCCAGAGGACAGACATCAGTTTTCTGCCCTGCTGCTACTTACCCTGCCCCCGGCCAGCGGAACAGAGAACCCAGAGACGGAACCCAGGGGGATTCATCTGGTTCTAGAACCTTCCAACAGGGAATCAGAGTAGGTTCTAGTTCTGGTTCCGGAGGGTTCCAGAACCAAAGTCGGAGAGAGCAGCACTCGGTACCTGATCTGTCGTTtaataagagaggaggaggaggaggaggaggaggaggaggagggatgaagcAGGACAACGGACCTGCACCAGCTGCCTCTAAACCAGGCCAGCACCAGACAGAGTTCAGTTCTAACTGTGTATCAGAACCTAAAGGGGTCCAGAGGTCTGACTGCGGAACAGACAACAGAGCTGAGCCCAACAGCAgacggagaggaggaggggggaagtcCCACAGGGAAAGGCCCAACTCTGACAACTTTGACCGTTACCGGGACAACGGACCGTCGAACTCTTCAACGTCGTGGGCGGGGCAAGAGAAGGACTGTAGCGCCGGGACGCAGGACTGGGGCGTGTCCCGTGGCGAGTCTCGTCCAGTGAAAGGCCAAGTGGGCAGCGGCCCAGGCACGGGGCCACACCTCCAAAACGGTGACTCGTCAACGGAACACCGGACAGGGCCAATCAAACAACAGAACTACTCCTCTGGTCCCGCccccagggagagggaggagccACACAACAGGAACAGCACTAACCCCGCCCATAACAACTCCAACACCGCCCCTAAGAAGAGAACGGGGCAGGTCAAAGGGCAGAGGTCAGACCAGAGGTCAGACCAGGGGCAGGTTGGGACCATGGAGCCTGCAGTGGCTCAAGGCCTGGGGAACTTGAAACCAGGAGACCAGGTTCTAGCGCTCTACTGGGAAGACAACAAGTTCTACAGGTCCAGGATAGATGCTGTTCATCCCTCTGGTCTCACGGCCGTCGTGGTCTTCACTGAGTATGGAAACTGTGAGGAGGTCCTTCTACACAACATCAGACCGGTCAGCACGGACTTCTGGaaggaagaggaggggctaGAGTACCGGCGCGGGGGAGACGGGCAGCCTAGGACCACCACGAGGACGCGGCCCACGGTCCAGTATTACCAGCCGCCCAGGGCCAGGGACTGACTGACCACatcatgactgagttacgACGGAATCTACAAAGGATCCCAGAGGTCGACGCATCTGACCTCAAAAAAACCACATCTTTCTTCTCTCGGGGGTTGCAAAATTCCCGCGACTTTCCCAGGATTTTTCCCAGAAATCCCTGTTTTGGAGGATTCCACGTCCTTATTGTTCCCTCCTGATTCCACAGAATCGTTCAACTGTGGATTTCTGAAAAACAGACTTTTGGGAAAGTTAGTGGGATTTTTTTGCAGgccttctctcctcttcaccaAATACACGATGACTGACTCTTCCTCTGTGTTCACTTTGTGTCTCCATATCAAGAAGTGTGAAACATTCAGGAATTGGAATTGTTGCTCAAAAGGAGGCTGACAACGAGGACTCTAGCTAACAGACTTTGTGAAGCGCACAGCCGCTGTACACGGGGAAGATTTGTAAAATAGTTTATTATTAGACAAATAAAAATACTGCTCCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727589 lncRNA upstream 12417 2365062 ~ 2365516 (+) True G1510139
TU1727588 lncRNA upstream 13787 2362589 ~ 2364146 (+) True G1510138
TU1727557 lncRNA upstream 37929 2276095 ~ 2340004 (+) True G1510111
TU1727580 lncRNA upstream 41120 2336412 ~ 2336813 (+) True G1510130
TU1727507 lncRNA upstream 223108 2152600 ~ 2154825 (+) True G1510073
TU1727939 lncRNA downstream 50410 2504180 ~ 2504701 (+) True G1510396
TU1727944 lncRNA downstream 64290 2518060 ~ 2518365 (+) True G1510400
TU1727948 lncRNA downstream 71518 2525288 ~ 2552109 (+) True G1510403
TU1727959 lncRNA downstream 87426 2541196 ~ 2542349 (+) True G1510414
TU1727965 lncRNA downstream 94589 2548359 ~ 2549308 (+) False G1510419
XM_036951393.1 mRNA upstream 645843 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1518134 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1585247 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1593060 774850 ~ 784873 (+) True LOC118941073
XM_036951462.1 mRNA upstream 1756494 589742 ~ 621439 (+) False LOC110515393
XM_036951394.1 mRNA downstream 760268 3214038 ~ 3214454 (+) True LOC118941056
XM_036951395.1 mRNA downstream 845671 3299441 ~ 3300228 (+) True LOC118941057
XM_036951379.1 mRNA downstream 2164318 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 2200271 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 2200280 4654050 ~ 4748243 (+) False LOC110516278
TU1727296 other upstream 695075 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 988755 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1596730 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 1770726 606622 ~ 607207 (+) False G1509068
TU1727953 other downstream 80542 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 251072 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 254943 2708713 ~ 2709747 (+) True G1510527
TU1728263 other downstream 418624 2872394 ~ 2874166 (+) True G1510639
TU1729203 other downstream 1827646 4281416 ~ 4284944 (+) True G1511398

Expression Profile