RNA id: TU1727592


Basic Information

Item Value
RNA id TU1727592
length 532
RNA type TUCP
GC content 0.52
exon number 5
gene id tdrd3
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2377933 ~ 2453770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGACTATATTTGCATTTgatactttatttttttatttgaaagaaAATGGCTGAAATCAACTTAGCCCTCACTAAAGAAGGCTGGTACCTTACAGACGAAGGAATAGAGGAGTTGAAAGGCACTTCTGAGAACCCCTCAGCTAATTACCTTATTCGCGTTGCACTCAATTTGGAGGGTCCGTGTGTGCTGCAGGTTCAGAAGGTGAGGAACGTGTCGGCTCCCAAGGACAACGAGGAGTCTCAGGGAGCCCCCAGGATGCTGAGGCTGCAGATGACAGACGGACACACCAACGCTGTGGGCCTCGAGTTCAcacacctgtcccagatcagcCTGAACACCCCTCCAGGAACCAAGGTGAAGGTCCTTGGTACGGTCCAGGTGAAGAATGGCATTCTGCTTCTGGACGACTCCAAGATCTCCGTCCTCGGAGGGGAGGTCGACCACATGATGGAGAAATGGGAACTGCAaaggAGCTTGGCCAAACACAGCAGGAGTAACATCGGAAGAGAAGGTGGAGCCCCTCCCTTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727589 lncRNA upstream 12561 2365062 ~ 2365516 (+) True G1510139
TU1727588 lncRNA upstream 13931 2362589 ~ 2364146 (+) True G1510138
TU1727557 lncRNA upstream 38073 2276095 ~ 2340004 (+) True G1510111
TU1727580 lncRNA upstream 41264 2336412 ~ 2336813 (+) True G1510130
TU1727507 lncRNA upstream 223252 2152600 ~ 2154825 (+) True G1510073
TU1727607 lncRNA downstream 7294 2408221 ~ 2409769 (+) True G1510154
TU1727608 lncRNA downstream 8135 2409062 ~ 2411670 (+) True G1510155
TU1727939 lncRNA downstream 103253 2504180 ~ 2504701 (+) True G1510396
TU1727944 lncRNA downstream 117133 2518060 ~ 2518365 (+) True G1510400
TU1727948 lncRNA downstream 124361 2525288 ~ 2552109 (+) True G1510403
XM_036951393.1 mRNA upstream 645987 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1518278 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1585391 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1593204 774850 ~ 784873 (+) True LOC118941073
XM_036951461.1 mRNA upstream 1756638 589742 ~ 621439 (+) False LOC110515393
XM_036951394.1 mRNA downstream 813111 3214038 ~ 3214454 (+) True LOC118941056
XM_036951395.1 mRNA downstream 898514 3299441 ~ 3300228 (+) True LOC118941057
XM_036951379.1 mRNA downstream 2217161 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 2253114 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 2253123 4654050 ~ 4748243 (+) False LOC110516278
TU1727296 other upstream 695219 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 988899 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1596874 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 1770870 606622 ~ 607207 (+) False G1509068
TU1726125 other upstream 1770870 606622 ~ 607207 (+) True G1509068
TU1727953 other downstream 133385 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 303915 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 307786 2708713 ~ 2709747 (+) True G1510527
TU1728263 other downstream 471467 2872394 ~ 2874166 (+) True G1510639
TU1729203 other downstream 1880489 4281416 ~ 4284944 (+) True G1511398

Expression Profile