RNA id: XM_036951096.1


Basic Information

Item Value
RNA id XM_036951096.1
length 3666
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110495595
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4895914 ~ 5043592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAAGAAGATGACGCTGTTGCAATGTCGTAGTTGGGAACAGGAAGTTCCGGGTAGAAAACGACAGAACTGTGTTATGTCGATAGTGGTTGTGTCCGTTTCAAATGTATTATTGTAGGCCGACTCAGATTAAGAGGCCGttaacatcaacagtgaggacaaacccagcctgcttctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagaggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcatcattaaagatgaagaagaggaggaggagattggTACATCTGTTAGTCATGACCGACTCAGATTAAGTCTGAAGCcggtaacatcaacagtgaggacaaacccagccttcctctctccttccacactgagttcaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagaatatTGGGAAATCTGTTTCTCATGTGagtccaaacctacagtcactgggtcctgaatgtgacagtggagcccagtttgcactgcaggatccagggatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagaagattgggACTTCTGTTTCTCATGGCCGACTCAGATTAAGTCTGAGGCCtgtaacatcaacagtgaggacaaGCCCAggctgcctctctccttccacactgagtagaaacctacagtcactgggtaCTGATagtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagttggaagactgcagtcaagcactggagctgaatgtcaacattaaagatgaagaagagaaGATTGGGGAATCTGTTTCTCATGGTCACGTTGAGACGTCCTCTACATCCAGAGAGCAGAAGCAGGAAGTTCACAGAGCTAAGAGGTTTCACCACTGCCCACATTGTGAGGAGATTTTCCCATATCTATCAAAGCTAAAAATACacctaaaaacacacacaggagagaatctATATTCCTGTACTGACTGTGGGAAAAGATTCACAACATCACATTCTCTGACAGTTCATCAGAGAGTGCACACAGgtgagaagccttactcctgctctgccTGTGGGGGGAGATTCTCTCGAAGGAGCCACTTAAAGAGACACCAacatatacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcgCAACATCATCTGACCTAAcagttcaccagagaacacacacaggagagaagcctttttcctgctctgactgtggggggAGATTCTCTCAACTGAGCAGTTTAAAAAAACACCAacatatacacacaggagagaagccttacttctgctctgattgtgggaagagtttctcccTATTGGATACCTTAAAAGCACATgcacgtatacatacaggagaaaagccttactcttgctctgactgtgggaagaggttcTCTCAACGGAGCAACTTAAAAATACACCAACGTTTAcatacaggagaaaagccttattCCTGCTCGGACTGTGAAAAGAGTTTCTCCCAATTGGATAAGTTAAATAGTCACCAGCGaatacatacaggggagaagccttacttttgctctgactgtgggactTGTTTCAGCCAAATTGATACGTTAAAATGTCACCAGcgaatacatacaggagagaagccttactcttgCTCTGACTGTGGGCAGAGTTTCTCTCAACACAGCAGCTTAAAGAAACAccaacgtatacacacaggagagaagccttactcctgctctgaatgTGGGTCGAGTTTCTCTCTACAGGACAGCTTGAAATCACAccaacgtatacacacaggagagaagccttacttctgctctgactgtggaaagaatTTCTCTCGACACAGCAGCTTAAAGAAACACCagcgtatacacacaggagagaagccttacatcTGCTttgaatgtgggaagagttttacaaCATCAAGTGCTCTGACAGTTCATCAGAGagtgcacacaggagagaagccatactCCTGCGCTGACTGTGGGGGAAGTTACTCTCGACTGGGAAACTTAGAGACACACCATCGTACACAtacgggagagaagccttactcttgTTCTGACTGTGgtaaatgcttcacaacatcaagTGCTCTGACTGTTcatcagaaaacacacacaggagagaagcacACCAACGGATACACACAAGCCAAGAGTTTTGCAGATTGAAATCTTATGTTTTCGGTGGATTGACAATGGACCCGTTTTAAAGTATCCTTTTTTTGGTAACAGTTCTCTCAAACCAGCTTAAAGTCACTCCATCACTTAATTCTCATTAAAGAAGTGGTAAGTGAATTGGATCAAATGAAGAAAGCGTAGAACACTGTATTGTAATCCTGTTGTTTCTCACTGGGAGAGAACTGTGCAGAGGAAAAAGGAGCATTACAGAATGTTAGCCTCTTTACTGATCAGTGTGCATCTTGTCAGTTTTGGTGTTTTGTTAGCGTCTACTGCAAAGATATTGAGATGACCTTGGATTGGCCCTTAGTGTTGAATATCCTCTTAGGTTTCTCTTGTTGAAACAATGGAGTCTGATGGTTGACTGGATAGTACTGCTTCCTTCTGTAGTTTTCTGTGGGAATGAGCAATTACACACAGCATGTAtgagatagagatggtgtgatgatcagttttcagcatatatatatatatatatatatatatatgaagaaGTGTCAATAGAAAAACTATTAAAAATAAATTGAATGCAGCTACTTCGCTGTTATTCTAGCTACACGGTTTCACGTGActgttagccgtagttggctagcaagCAAGGCATAACAAACGActtggtcgcgtccatagatacagaataAAAATAGTCAGTTTGAAATGATTGCGTTTGTATAGTCTGTGatgtgccatctgtaaatacgaatacattTGTTTAAAGTACTTCTGCATAAGTGTTACTCTCCActtttctggaggaccgagttttgaaatcagtggaattagagtatgttagctaaggagatggagaaaacccACGtttctggattacatcttcaaactaagggcaaacaTGGTATCTGTGACAGGGAGACACATCCATCCATGATGTATACGGGTAaggtaatgtagctagctagactttcagatattacacgtttctaattttgacagtgtttttttttggccgagctggtcgcccggccaaactgagatattgggggagaaggacctttgtcagggaggtgaccaagaacccaatggtcactctgacaaagctccagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctacagcactttgCCAATCAGCACATGACttcctgcttggagtttgccaaaaggcacctaaaggactctcagaccatgacaaacaagattctcttgtctgaagaaaccaagattgaactctttggcctgaatgccaagcttcacgcctggaggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730111 lncRNA upstream 13293 4854714 ~ 4919978 (+) False G1512107
TU1730112 lncRNA upstream 13293 4854714 ~ 4919978 (+) True G1512107
TU1730104 lncRNA upstream 15146 4884861 ~ 4918125 (+) True G1512101
TU1730134 lncRNA upstream 18593 4914051 ~ 4914678 (+) True G1512127
TU1730124 lncRNA upstream 56104 4876875 ~ 4877167 (+) True G1512118
TU1730177 lncRNA downstream 32145 5075737 ~ 5176509 (+) True G1512167
TU1730180 lncRNA downstream 37056 5080648 ~ 5172352 (+) True G1512168
TU1730183 lncRNA downstream 41166 5084758 ~ 5084998 (+) True G1512171
TU1729884 lncRNA downstream 109391 5152983 ~ 5156673 (+) True LOC110510710
TU1729900 lncRNA downstream 125788 5169380 ~ 5439543 (+) True G1511921
XM_036951092.1 mRNA upstream 7646 4895914 ~ 4925625 (+) False LOC110495595
LOC110528775 mRNA upstream 42286 4880668 ~ 4890985 (+) False LOC110528775
XM_036951119.1 mRNA upstream 190490 4709860 ~ 4742781 (+) False LOC110516278
XM_036951168.1 mRNA downstream 109337 5152929 ~ 5739611 (+) False LOC110510710
XM_036951165.1 mRNA downstream 109355 5152947 ~ 5739611 (+) False LOC110510710
XM_036951166.1 mRNA downstream 109357 5152949 ~ 5739610 (+) False LOC110510710
XM_036951171.1 mRNA downstream 109360 5152952 ~ 5506477 (+) False LOC110510710
XM_036951173.1 mRNA downstream 109360 5152952 ~ 5735479 (+) False LOC110510710
TU1730118 other upstream 65263 4865995 ~ 4868008 (+) True G1512113
TU1729999 other upstream 315319 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 316522 4610018 ~ 4616749 (+) True G1512020
TU1729203 other upstream 648327 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 2059105 2872394 ~ 2874166 (+) True G1510639
TU1730195 other downstream 60495 5104087 ~ 5106088 (+) True G1512182
TU1730220 other downstream 199142 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 564316 5607908 ~ 5613036 (+) True G1512309
TU1729877 other downstream 620376 5663968 ~ 5671333 (+) True LOC110513970
TU1730480 other downstream 1134248 6177840 ~ 6179111 (+) True LOC110518779

Expression Profile