RNA id: TCONS_00047687


Basic Information

Item Value
RNA id TCONS_00047687
length 4349
RNA type mRNA
GC content 0.37
exon number 11
gene id XLOC_024032
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18953575 ~ 18978083 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACGATCTGCACGAATGATACCTCATATCAATGCTTTAACGTATTCATGTTATAACAGCTGTCTatgataaataaaagaaaataaaaagctaaaaatcCACTACCAACTATCTAAGTGCGTCGGTCTTATCAAAacagggacttttattttgaacttaGCCTTTACCTTTGTTGACATATGTACCTACACCGGCTTCATTCATCATGTGTAGCATCATTTAGCTCCTATTTTCCTACACTAAACACTGATATGTGTAAGAAAAGGTCTGAAGAAAATATATGACAGTAAACCACCAAATAAGATGGAAGAAAGGCAGTATTCCTCTCTGACGGCTCCAATGGATTATCTTCAGTACTGGTACCAAAGCAACCCTCAGCAGTACCAGGCTGAGCAGGTGCCACAGTACCAGCAGCTAGTCAATGCCAGCCAGTACACAGAGAGACCCATGGAGGAAAAAATCATGACTGATTTATCTGTGCATCAAGACCCATATCAAGATCAACCTCAACAGTTTCAACAGCTCCCTGTCCAACCACCAGcagctaTTCCAGTGACTCCTGCTAAAGGAAAGAAACGGGGGAGGCCTCGTAAAGGGGAAGAAAGGGAAAAGACAGAAGCTGAAGAGTCGGCCAAGAAAGCGAAGAGGACATTAGATCGGTTCAACGGCATGTCGGTGGAGGAAGTCATGGCTCGAAAGCTACCAGACGTCATCACACATAACCTTGACATGCTGATTATTGGCATCAACCCTGGACTGTTGTCAGCCTATAAGGGAAGGCATTATCCAAATCCTGGGAACCATTTTTGGAAGTGCTTGTTTCTCTCTGGTCTGACTAATGAACAGCTCAACCACATGCATGATCAGACACTACCTGAACACTACGGCATTGGTTTCACCAATATGGTGGAGAGGACCACCCCTGGGAGTAAAGACCTTTCAAACAAAGAGATCCGTGAAGGAGGCCACCAGCTTTTGGAAAAGCTCCAGACATACAGACCTTTAATTGCTGTGTTCAATGGAAAATgtatttatgaaatattttgcaAGGAGATTTTTGGAGTCAAGGCCAAGAACTTAGAGTTCGGATTGCAGCCGTACAAAGTCCCAGAAACGGAGACGGTTTGCTATCTGATGCCATCCTCAAGCCCGCGCTGTGCCCAGTTTCCTCGTGCTCAGGACAAAGTGCACTTCTACATCAAGCTAAAAGAGCTCAGGGATCAGCTGAAGGGAGTGACCAAGACTCAGGAGATCCAGGAGACAAACTACAGCTTCGATCTGAATCTGGCCAAAGaGGATGCCAAAAGAATGGCAATCAAAGAAGAGCAGAATGACCCTGGGTACGAGGAGACCTGTGCTCATGGGTCGTGGGGGGAACCACAGCAAGCGTTTGGAGTCCATCCTTCTACAAATACAGACCAGGTAATGGATGACCGGTGGACAATGCAGCCATTTGCAGAGCAGATTCCAGACATCAGATGTAGCAACAACACCCGAACAAGCtaagaaaaaaaagttgatgCACAAAGACTGTTGTCTACACTGCATATACAGAGAAGgaccaacaaaacatttttttgtactgtttttattttatattttaatacgtTACGAGGtgttacattatttaatgtgtgtgATTTCAGTGTGTGTAACATAACTTTGTTACTTGAGTGAACATTTCTGATTAAGACATGTTCATTTTGTgcctctattttttatttattttttaaggaaaCTTCAATTACATCGTTCAAAACTTTGGGggtattgtaatattttatttaaaaaataaattttattgaagtacagttgaagtcagaattgttagcctccctttaattttttttttcttttaacatatTTCCTAACTTATGTTTActagagcaaggcaattttcacagtatgtctgataatattttttcttctggagaaagtcttatttttttatttcggaTGGTATAAAaccagttttaaaattttttaacaccattttaaggacaagattataagcccccttaagctattttttcgatagtctacagaacaaaccatcattatacaataacttgcctaattaccctaacctgcctagttaacttaattaacctttttaagcctttaaatgtcactttaagttgtatagaagtttcttgaaaaatatctagtaaaatatttttttctgtcattatggcaaaaataaaataaatcagttattagaactgagttattaaaactattatgtttagaaatgtgttgaaaaaaatcttctctacgttaaacagaaattggggccaaaaaataaacaggggggctaataattctgacttcagctgtatgcaTTAAATGGGTAGTTCTTGCAAAAAGACAATGTCTTCCATGCATGAACGAAACGTTCTCCTGTAGTGAATCCATGGGGTTTTGTAAGAAAATATCCAAATGTAAAACTTTATAAAGCATTTTGTGTGATTTCTAATGATTTTACACTTTGTCCCGAGGCTTTGGAGTGTGTTTTGAGAAAACCCAGAAGCTTTCGAGGAGCCGTATCAAGGCTTGTATCGTTTTGGAGAAATGATGTCATTTATGAAATCCGAAGTCTCATTTTCACCTGACTGGTAGAGGAAATAGTTTAAATGTGTTCGAATGACATAAGCACACTAACTTTCCATTTAGTCGCTGCCACCTccagttttaaaataataatattgtgatattaaatcattattaaataataatataataaataacttttttttttttgctggttcatcttcagctgggtcagttggcatttctgtattgagcttgcatgttctccctgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcggtatagatgaattaaataagacaaattggccgtagtgtatgtgtgtgattgagagtgtatggttgcagctggaagagcatctgctgtgaaaaacatgtgctggataagtttggcggttcattccgctgtggcgaccccagattaacaaagggactaagccgaaaagaaaacgaacgaacgaatgaatgaatgaatgttaagtgCCACTAGCTGTACAGGAGGCTGAGTAGCACATGCACTGTTAGGACAAACATAGAAACACAGTAAAGAAAGATAACCAAAACAAagccaaccaaaaaaaaaaattaaacagacttCTCTTGGCTTTTTTGAAAGTTTTTCTTATAAATCCTTGTTTTGTACTTTTCTACTTGCTTTATTTGTCATAACGGCTTTATACTCCTGTCGTTTTGGTATCGCTAAATGtactaaaacaatatttgtaaagaagaagacaaagtcaacTTCACTTAGAAGTTACACAAACTGTTATTAAAGATTTAAATATggaattttatttaacaaaactgcaTTGATTCGCTACAGGAGATCTTTATTCACCCCCTGGTGCCCTGTGAGATACATAGGCTtggttgtacttttttttttgtttttggactATAGAAGTAAAAACTGCCAAAAAAGCCATTCAGGATgctttaagggtgagtaaatcatgggCTAATTTCATTTCGGGGGAAACTAACTATTTAATTAGAGGAAAAGTGATTTTTAATGTTACAAAAGGTTCAACTTTTACTTCATCCACTTTAATTCATCAAAGCAAATTCTGAAAGACAGTCAAAAGGACACATCTGTAATCAACGaagataataagaaatgtttcctGAGCATTAAATTGAGGATCATGTGACCATGAAGACTGAAAAAGTGATGcttaaaaaagttattattttgttttattttgttttatcaaataaatgcagccttgttaaGTATAACtgacttcttttaaaaatattaccaGCCCCAaaattttgaaagttttttttttttttattgctcctTTGTTATTGGGATTATTTAGAGAAGACCTCATATTTGAGAATttcagtgcaaaaaaataaaaaatcctaatgCAAACCACTGCTGGACTCTGGAAGAGGTTTATCACTGTGCATGTCCTCATTGCATGGATATAGTAGTATTGCAGACGGCATGTTCAGTACCACATGATGGTGCTTTTTGGATACCAATCACTCTGTTTACCTCATTCTGAACGGTGTTTTTAGACTTTTTagagttgtgttttgttatttgttatatcaGTGTGCATATTTGTTAAGTACCATTTATATACTTGTTTTGTTACATTGTAATAATCTGGCCACATTGTTGCTGTGAAAAGTCTGTACTATGTATGACATTCTGtaagttgtattttattttttatatgcaaGTGTTACTAATGATATGGTTATAGGGCTGAATAAAAGCAAATATGATGAAA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0006285 base-excision repair, AP site formation biological_process
GO:0005634 nucleus cellular_component
GO:0004844 uracil DNA N-glycosylase activity molecular_function
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0019104 DNA N-glycosylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-30 Predicted to enable pyrimidine-specific mismatch base pair DNA N-glycosylase activity and uracil DNA N-glycosylase activity. Predicted to be involved in base-excision repair, AP site formation. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Orthologous to human TDG (thymine DNA glycosylase).

Ensembl:

ensembl_id ENSDART00000155610

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049222 lncRNA upstream 29184 18920543 ~ 18924391 (+) False XLOC_024031
TCONS_00049223 lncRNA upstream 29184 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047686 lncRNA upstream 29184 18921825 ~ 18924391 (+) True XLOC_024031
TCONS_00047684 lncRNA upstream 68006 18884678 ~ 18885569 (+) True XLOC_024029
TCONS_00049221 lncRNA upstream 208546 18744021 ~ 18745029 (+) True XLOC_024027
TCONS_00049224 lncRNA downstream 392153 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049225 lncRNA downstream 479760 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00047713 lncRNA downstream 588135 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00047728 lncRNA downstream 769969 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047734 lncRNA downstream 906681 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00047685 mRNA upstream 46704 18889332 ~ 18906871 (+) True XLOC_024030
TCONS_00047682 mRNA upstream 64574 18877675 ~ 18889001 (+) False XLOC_024028
TCONS_00047683 mRNA upstream 65190 18878249 ~ 18888385 (+) True XLOC_024028
TCONS_00047681 mRNA upstream 232278 18711804 ~ 18721297 (+) True XLOC_024026
TCONS_00047679 mRNA upstream 274504 18583877 ~ 18679071 (+) False XLOC_024025
TCONS_00047690 mRNA downstream 591 18964782 ~ 18978083 (+) False XLOC_024032
TCONS_00047691 mRNA downstream 1239 18965430 ~ 18976633 (+) True XLOC_024032
TCONS_00047692 mRNA downstream 44306 19008497 ~ 19021823 (+) True XLOC_024033
TCONS_00047693 mRNA downstream 77138 19041329 ~ 19045977 (+) True XLOC_024034
TCONS_00047694 mRNA downstream 131040 19095231 ~ 19100469 (+) False XLOC_024035
TCONS_00047675 other upstream 464569 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 855714 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1074943 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047656 other upstream 1344844 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047645 other upstream 1683009 17244573 ~ 17270566 (+) False XLOC_024003
TCONS_00047695 other downstream 131111 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047707 other downstream 525359 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047732 other downstream 810368 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 1628292 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 1639705 20603896 ~ 20604012 (+) True XLOC_024067

Expression Profile

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