RNA id: XR_005037303.1


Basic Information

Item Value
RNA id XR_005037303.1
length 2157
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110495595
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4895914 ~ 5043592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACATGTTCTTGGTTTTGTGTAAAATGTTTATGAGCTGGTAAATAGCCTCGTCCGAACCATCCTGATCTCGCGAGTTTACATGCACTGTTTCGTTAATGTAAGCTCGCGAGATCTGGATGGTTCGGACGAGGCTCGTCAAATGGCGGCTTCAACGGTTTTGGTCGTCTTCCTAGGAGTTTGCTCGTGGGGAAATGGCGACATGAGGCTGTGTGATGGAGTGTCAAAATAGAGAGAAGCTAGCTGAAGTTATCCTTCACCATTTGGAGAGAGAGGCCAACTGCATGGAATGGCGTCGATTAATGCGGATGAATCGGAGCACGTATCAAACTCTATCCATGGAGGAccaagtgtctgcgggttttcgctccacccttgtacttgattaatgaattaagGCCGACTCAGATTAAGAGGCCGttaacatcaacagtgaggacaaacccagcctgcttctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagaggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcatcattaaagatgaagaagaggaggaggagattggTACATCTGTTAGTCATGGGGACCATGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAGGTCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAATTCTATCAAAGCTAAAGATACATctaaaaatacacacaggagagaagccttactcctgctctgactgtggggggagattctcccGATTGGATACCTTAAAATGTCACCACcgaatacatacaggagagaagccttactcctgctttGACTGTGGTAAATGCTTTAAAACATCAACTGAGCTAAAATCTCATCAGCgaagacacacaggagagaagccttactcctgctctgactgtggggagAGTTTCTCCAGATTGGATACCttaaaatgtcaccaacaaatgcatacaggagtgaagccttactcctgctctgaatgtggaaagagtttctctcaacagggtaacttaaaaacacaccaacgtatacataaaggagagaagccttactcctgctctgactgtgggaaaggCTTTAAAACATCAACTGAGCTAAAATCTCACCAGagaactcacacaggagagaagcctcactactgctctgactgtggggcgaGTTTCTCTCAATTGAGCAATTTAAGAAGACACCAACGTATACAtaaaggagagaagccttaccattgctctgactgtgggacaAGTTTCTCTCAATTGAGCAACTTAAAAACGCACCAACGCATACATAAAGGAGAGAAGTTCTCTCAGACCAGCTAAGATTAAAGTCACTCTATCACTTAATTCTCATTTGATAGAAGAAGTGGTAACAGTGAATTGGATCAAATGAAGAAAGCGTAGAACACTGTAATCTTATTGTTTCTCAATGTGATAGAACTGTACAGAGGAAAAGGATTGTTATAGAATGTTAGCCTCTCTTTACTTTACTGATCAGTGTGCACCTTGTCAGTTTTGGTGTGTTTTGTTAGATTCTACTGTAAACATGTTGAGATTACCTGGATTTTCCCTTAGCGTTGAAAACCCTCTGAGGGATCACTTGTTAAAACAATGCAGTGTGGTGGTTGACTGGGTGATACGGCTTCCTTCTGCAGTTTTCTGTCGGATTGAGttagtagacacaacatgtatcagatagagatggggtgatgatcagttttcaccACTAGTTTGGGTATATTATTTTTGCTATTAATCAACTTTGTTTGAAACATCgacactgaaaaaaaaaaatatatatatatataaatgcaacatgtttttagtttttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctggcagacctggcaacatgtgaagtgttggtcccatgtttcaagaCCAGAAATGTTCCTTATGCACAAAAAgggtatttctctcaaattctgtgctcAAAAttgtttccatccctgttagttagcattttttctttgccaatataatccatccatctgacagatgtggcatatcaagaagctgattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729908 lncRNA upstream 42 4880773 ~ 4933600 (+) True LOC110528775
TU1730111 lncRNA upstream 13664 4854714 ~ 4919978 (+) False G1512107
TU1730112 lncRNA upstream 13664 4854714 ~ 4919978 (+) True G1512107
TU1730104 lncRNA upstream 15517 4884861 ~ 4918125 (+) True G1512101
TU1730134 lncRNA upstream 18964 4914051 ~ 4914678 (+) True G1512127
TU1729950 lncRNA downstream 2033 4944941 ~ 5000801 (+) True LOC118941222
TU1730137 lncRNA downstream 8076 4950984 ~ 4952108 (+) True G1512130
TU1729965 lncRNA downstream 72066 5014974 ~ 5016642 (+) False LOC110495595
TU1730177 lncRNA downstream 132829 5075737 ~ 5176509 (+) True G1512167
TU1730180 lncRNA downstream 137740 5080648 ~ 5172352 (+) True G1512168
XM_036951092.1 mRNA upstream 8017 4895914 ~ 4925625 (+) False LOC110495595
LOC110528775 mRNA upstream 42657 4880668 ~ 4890985 (+) False LOC110528775
XM_036951119.1 mRNA upstream 190861 4709860 ~ 4742781 (+) False LOC110516278
XM_036951107.1 mRNA downstream 22849 4965757 ~ 5027955 (+) False LOC110495595
LOC118941222 mRNA downstream 41052 4983960 ~ 4984135 (+) False LOC118941222
XM_036951100.1 mRNA downstream 63309 5006217 ~ 5043592 (+) False LOC110495595
XM_036951101.1 mRNA downstream 72027 5014935 ~ 5043592 (+) False LOC110495595
XM_036951103.1 mRNA downstream 75443 5018351 ~ 5043592 (+) False LOC110495595
TU1730118 other upstream 65634 4865995 ~ 4868008 (+) True G1512113
TU1729999 other upstream 315690 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 316893 4610018 ~ 4616749 (+) True G1512020
TU1729203 other upstream 648698 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 2059476 2872394 ~ 2874166 (+) True G1510639
TU1729941 other downstream 76352 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 161179 5104087 ~ 5106088 (+) True G1512182
TU1730220 other downstream 299826 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 665000 5607908 ~ 5613036 (+) True G1512309
TU1729877 other downstream 721060 5663968 ~ 5671333 (+) True LOC110513970

Expression Profile