RNA id: TU1729884


Basic Information

Item Value
RNA id TU1729884
length 2748
lncRNA type read_through
GC content 0.43
exon number 2
gene id LOC110510710
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5152929 ~ 5739611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACACGGCAGAATTGTGCAGTCTAGACGACAACTTCTGTGTCCGTTTCAAATATATTACTACTGACCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaagacaaacccagcctgcctctctccttccacactgtgtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagaagattgaGAAATCTGTTTCTCATGGTAAGCACAAGTTTgccaaaaacaacacagagttacacatgggatagacAAACGTacgtcaataacacaatagaacagtcTATAtgctgtgtgtgcaaatgtagtaagattagggaggtaaggcaataaataggccgtagtggcgaaataattacaacttagcattaacactggagtgatagatgtgcaagtagagatactggggtgcaaaagaggaaaaataaataaaaatatggtgATGGGGTAGTTgggtatttacagatgggctgtgatcggtaagctgctctgacagctgatgcttaaagttagtgagggagatatgtctccagccTCAGTGATTTTTGAGACCTGGGAGGACAGGCGGCCTaatgaggagttggctttggggatgaccagtgaaatatgccTGCTGGATcgcttgctacgggtgggtgttgctatggtgaccagtgagcagagataaggcggggctttacctagcaaagacttatagatgacctgaagccagtgggtttggggaccaatatgaagcgaggaccagccaacgagagcatacaggtcgcagtggtgggtagtatatggggctttggtgacaaaacagatgacactgtgatagactacatccaatttgctgagtagagcgttggaggctattttgtaaattacattgccgaagtcaaggatgggtaggatagtcagttttacgggggtatgttatgcagcatgagtgaagtaggctttgttgcaaaataggaagccgattctagatttaattttggtttggagatgcttaatgtgagtttacagtctaaccaggcacctaggtatttgtaggtgtccacatattctaagtcagaaccgtccagagtagtgattctggacgggcgggcaggtgtgggcagtgatctgttgaagagcatacatttagttttacttgcatttaagagcagttggaggccacggaaggagagttgtgtctcattgaagctcgcctggaggttagttaacacagtgtccaaagaagggccagaaatatacagaatggtatcatctgcgtagaggtggatcagagaatcaccagcagcaagagctacatcattgatatatacagagaaaagagtcggcccgagaattgaaccctttggcacccccatagagactgccagaggaccggacaacaggccctccgatttgacacactgaactctattggagaagtagttggtgaaccaggcgaggcagtgatttgagaaaccaaggctgttgagtctgccgataaggatactgtgattgacagagtcgaaagccttggccaggtcgatgaagacggctgcacagtactgtcttttatcgatgacggttatgatattgtttaggaccctgagcgtggctgaggtgcatccatgacaaactcggaaaccagattgtggagaaggtacggtgggattctaaatggtcggtgatctgtttgttaacttggcttttgaagactttagaaaggcagggcaggatttCACGATGAACTGTTTCAATGAGAAGGTAGATGTTATTTCATGCTACTGACACTTGCATGGTTTGACACCAGTATTGCCagcatttgttttattcactggtctatctggagtgatcagagaggagactaaagaagtgaagtagacaaactgccagtgttttaaagttctatgaagtgagtctgtgtagtttctaacccttgtgatagtgagtggaggatgatatagCTCATAATTTTCATAACTTATGAGGTACttttagaatagttttattcCCCATTGTATTGcacagcctactgatatgaatacatacagtaccagactactgatatgaatacatacagtaccagactactgatatgaatacatacagtaccagactactgatatgaatacgtacagtaccagcctactgatatgaatacgtacagtaccagactactgatatgaatacgtacagtaccagcctactgaaatgaatacgtacagtaccagcctactgatatgaatacgtacagtaccagcctactgatatgaatacacacagtaccagcctactgaaatgaatatgtacagtaccagcctactgatatgaatacgtacagtaccagcctactgatatgaatacgtacagtaccagcctactgatatgaatacgtacagtaccagcctactgatatgaatacttacagtaccagactactgatatgaatacatacagtaccagcctactgatatgaatacgtacagtaccagcctactgatatgaatacgtacactaccagcctactgatatgaatacgtacagtgcattcggaaagtattcagaccccttgattttttcccacattttgttacgttacagccttattttaaaattgattaaatgaaaaatgttcctcatcaatctacacacaataccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730183 lncRNA upstream 67985 5084758 ~ 5084998 (+) True G1512171
TU1729965 lncRNA upstream 136341 5014974 ~ 5016642 (+) False LOC110495595
TU1729950 lncRNA upstream 152182 4944941 ~ 5000801 (+) True LOC118941222
TU1730137 lncRNA upstream 200875 4950984 ~ 4952108 (+) True G1512130
TU1730104 lncRNA upstream 234858 4884861 ~ 4918125 (+) True G1512101
TU1729900 lncRNA downstream 12707 5169380 ~ 5439543 (+) True G1511921
TU1729931 lncRNA downstream 98729 5255402 ~ 5255791 (+) True G1511952
TU1729858 lncRNA downstream 124772 5281445 ~ 5324126 (+) True G1511882
TU1729874 lncRNA downstream 151998 5308671 ~ 5312593 (+) True G1511895
TU1729957 lncRNA downstream 168100 5324773 ~ 5329556 (+) True G1511978
XM_036951101.1 mRNA upstream 109391 5014935 ~ 5043592 (+) False LOC110495595
XM_036951172.1 mRNA downstream 93078 5249751 ~ 5261517 (+) False LOC110510710
XR_005037318.1 mRNA downstream 111135 5267808 ~ 5275200 (+) True LOC118941027
XM_036951192.1 mRNA downstream 305229 5461902 ~ 5463689 (+) False LOC110513970
XR_002472060.2 mRNA downstream 305229 5461902 ~ 5463689 (+) False LOC110513970
XR_002472063.2 mRNA downstream 305229 5461902 ~ 5463689 (+) False LOC110513970
TU1730195 other upstream 46895 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 126653 5019260 ~ 5026330 (+) True LOC110495595
TU1730118 other upstream 284975 4865995 ~ 4868008 (+) True G1512113
TU1729999 other upstream 535031 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 536234 4610018 ~ 4616749 (+) True G1512020
TU1730220 other downstream 86061 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 451235 5607908 ~ 5613036 (+) True G1512309
TU1729877 other downstream 507295 5663968 ~ 5671333 (+) True LOC110513970
TU1730480 other downstream 1021167 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 1242090 6398763 ~ 6402914 (+) False LOC110495361

Expression Profile