RNA id: XR_005037307.1


Basic Information

Item Value
RNA id XR_005037307.1
length 892
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110513970
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5461902 ~ 5702970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGAAGAGACCTGAGTGTTCCCGCAAGATGGcggtcagtcagtgtagatgcgttatttttttaaactgaagGAATTATTGGATTTCCTCTCCCAAACCCCGGGCATAAAACAACATTGATTAAAACGTTGCTCGGAACgacacaatttcatgtgtacaacatctaaagacccgCATCACTATCATGGGAGCTTTGCCGTTTCTAAAAGGACGTATTTCGGGGGTTTTGGAGACTTCATTTTTTCCCCCACCCCCATACTGCTAAACAAGGATGAGGGCGCGATTTGCTGGTTTTGGTAAGGTTCTCAAAAACTGTCTCAAACACAAGGAGTGACATGTTCCAAATTCCCCCACCTTCCGGGTCAGTTGTAACAGGCTTTGGGGTGATaactttggtggtgggtgattctgtaacggccgttggtggtggaagaagaggaggaccaaggtgcagcgtgTCACTCACCAGCATTCCTACCTGAAATACAACTTTCCTGAATTGGATCCTTGGTTTGTACCCCATGAGGCAATTCAACTGATCCCAGGTGCTGCTCCAGGGCGCAGCAGACTGAGAAGAGGTGTGGACTTTTGGTTTGACTCACGATATGGAGAGCTGTGAAAGcctgtctgcagatgaagagGTCCCAGTGAAGGTCCAAGAGTCTGCAGGCCCATCCTTGTATGCCATAGGATTTGTGGGTACTTATGTTAGCACATGTTGTACACAACAATACAGTTAAAATTCACACAATGTAGGCTACAAAcgtattaaatcaaatcaaagtttatttgtcacgtgccccgaatacaacaggaccttacagtgaaatgcttacttacaggctctaaccaatagtgtgaaaaaaaaggtgtgtgtagataagtaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730283 lncRNA upstream 7356 5453597 ~ 5454546 (+) True G1512261
TU1730266 lncRNA upstream 33530 5427362 ~ 5428372 (+) True G1512245
TU1730264 lncRNA upstream 45726 5415678 ~ 5416176 (+) True G1512243
TU1729957 lncRNA upstream 132346 5324773 ~ 5329556 (+) True G1511978
TU1729858 lncRNA upstream 137776 5281445 ~ 5324126 (+) True G1511882
TU1730298 lncRNA downstream 47196 5510885 ~ 5511162 (+) True G1512275
TU1730299 lncRNA downstream 57701 5521390 ~ 5594716 (+) False G1512276
TU1730300 lncRNA downstream 57701 5521390 ~ 5564307 (+) True G1512276
TU1729966 lncRNA downstream 62772 5526461 ~ 5545525 (+) True LOC110495587
TU1730308 lncRNA downstream 75459 5539148 ~ 5544866 (+) True G1512284
XR_005037318.1 mRNA upstream 186702 5267808 ~ 5275200 (+) True LOC118941027
XM_036951170.1 mRNA upstream 200385 5152955 ~ 5261517 (+) False LOC110510710
XM_036951172.1 mRNA upstream 200385 5249751 ~ 5261517 (+) False LOC110510710
XM_036951103.1 mRNA upstream 418310 5018351 ~ 5043592 (+) False LOC110495595
XM_036951178.1 mRNA downstream 62674 5526363 ~ 5547958 (+) False LOC110495587
XM_036951180.1 mRNA downstream 62751 5526440 ~ 5637190 (+) False LOC110495587
XM_036951179.1 mRNA downstream 62761 5526450 ~ 5637190 (+) False LOC110495587
XM_036951258.1 mRNA downstream 109702 5573391 ~ 5576479 (+) False LOC118941022
XM_036951259.1 mRNA downstream 109715 5573404 ~ 5576479 (+) True LOC118941022
TU1730220 other upstream 218475 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 355814 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 435572 5019260 ~ 5026330 (+) True LOC110495595
TU1730118 other upstream 593894 4865995 ~ 4868008 (+) True G1512113
TU1730000 other upstream 845153 4610018 ~ 4616749 (+) True G1512020
TU1730336 other downstream 144219 5607908 ~ 5613036 (+) True G1512309
TU1729877 other downstream 200279 5663968 ~ 5671333 (+) True LOC110513970
TU1730480 other downstream 714151 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 935074 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 938384 6402073 ~ 6402914 (+) False LOC110495361

Expression Profile