RNA id: XM_036951187.1


Basic Information

Item Value
RNA id XM_036951187.1
length 5133
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110513970
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5461902 ~ 5702970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGAAGAGACCTGAGTGTTCCCGCAAGATGGcggtcagtcagtgtagatgcgttatttttttaaactgaagGAATTATTGGATTTCCTCTCCCAAACCCCGGGCATAAAACAACATTGATTAAAACGTTGCTCGGAACgacacaatttcatgtgtacaacatctaaagacccgCATCACTATCATGGGAGCTTTGCCGTTTCTAAAAGGACGTATTTCGGGGGTTTTGGAGACTTCATTTTTTCCCCCACCCCCATACTGCTAAACAAGGATGAGGGCGCGATTTGCTGGTTTTGGCCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagtagaaacctacagtcactgggtcctgattggGTCCTGATTGAGCCCAGTTTacactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacattggagctgaatgtcaacattaaagatgaagaagaggaggaggagattggGGAATCTGTTAGTCATGGACGACTAGAATTAAGTCTGAAGCCGGTAAATCCAACAGTGACGACAAACCCAACccgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggaacccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtccaacactggagctgaatgtcaacattaaaggtgaagaagaggaagagaagattgGGACATCTGTTTCTCATGgagaccaTGTTGAGACACTCTCTACATCCAGAGAGCAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGACTTTCCCAATTCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatccGTATTCCTgtactgactgtgggaagagattcacaaCATCAAGGAATCTGACAGTTCATCAGAGTGTGCACAATGGagtgaagccttactcctgctctgactgtgagaAGAGTTTTTCTCGAATGGACTTCTTAAAAACACATACACGTAGACATACAGGActgaagccttactcctgctctgaatgTGTAAAATTCTTCACAACATCAGCTGAGCTaaaagttcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaagactTTCTCTCAACTTGGCCCCTTAAAAagacatgaacgtatacatacaggagtgaagccttactcctgctctgactgtttAAAAGGCTTCACAACATCAGCTGAGCtaaaaattcatcagagaacacactcaggagagaagccttactcttgctctgactgtggaaagactTTCTCTCAACTTGGCCCCTTAAAAAGACATGAActtatacacacaggagagaagccttactcctgctctgactgtggaaattGCTTCACAACATCAGGTCAGCTagaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctctATTGTTTAActtaaaaacacatgaacgtatacatacaggagtgaagcctttctcctgctctcactgtgtaaaatgcttcacaacatcaactgacctaaaagttcaccagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaacTGGGCACTTTAAAACaacatgaacgtatacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaacTGGGCCCCTTAAAAAGCCATGAATTTATACATACAGGAGTGAAGCctttctcctgctctgactgtttaaaatgcttcacaacatcagctgagctaaaagttcaccagagaacacacacaggagagaagccttactcctgctctgactgtggaaaaagtTTCTCTCAACTGATTCTCTTAAAAAGACATGGACGTATACATACAAGagtgaagccttactcctgctctgattgtgtaaaatgcttcacaacatcaggtcagctaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctctACTGTGCAActtaaaaacacatgaacgtgtacatacaggagagaagccttactcctgctctgactgtggaaagagtttctctctACTGTGCAACTTAAAAACgcatgaacgtatacatacaggagttATTCCTCACCGCTGATCTGACTCTAGAAACTGTTTTAAAACAACAGCTGAGCTAAAAGGTCatcagagacacacaggagaggaATCTGACTTCTGCTCTTAATATGTCAAGAgtaactcaagtaaaagtgaaagtcaccaagtagaataccacttgagtaaaagtatttggttttaaatatacttaagtatcaaaactaaaagtatgaatcatttcaaattccttaaattAACCTCTACGGGATGGGTGTTCCTAAAACAGGACAGTTGCTAATATGACTATAATGACATTGTATTCAACAGCTAACTTTctgggacatagacatgtcttttatatgggcagaaagattAACAAAAATTTAAGCAAACTTCAGTGTCGAATTAACAGTAGcttttacagtgaaaaaataccatgcaaGTGTTTGAGTAAAGTGTAAAACAACTTATCactgcaactggtttgatacattcaaaCCAGTTGATTTGTCATCCttagggtcccagagataaaatgtagcatagtttcgtttgataaaatctatttttattttaaatgtaggaactgggtacTACATTTTTGAACCCCtgttgtctctggctccacacctaCCCCGCCTgaccatctagatgtgtgaaagttagtgaataagctaatgatccatcatgtatgaaattcctgtcagtctgtaaacttaaatgttttattaccatagagtttttgtatgttctctatagttttGTActtaaatgtatcaattgaccaattcaggACATTTGGGgaaactcctggcagacttgatacagtccagtaatgtaattcttcactggatcagtcaAACTtttcacacactgctgccatctggtagccaaaatctaaattacacCTAGACTCCTTTCTGAAAGTATGGCCTTTCTTGCATTTCAAAGTTAATGAAAAAAAGTTTTTGTTTGTATgatttttaccagatctaatgtgttattctcctacatgaatttcacatttccacacactTCAAATTGTTTCGTTTCAAAAGATAAAGAATATGCATGTCTTTGCTTCAGGTGCTGAGCTACAGGCTACAGATTTGGGTCATTTTAGGTGGAAATgtaaagagaaaaaaaagggtACAATCCTTTAGAGGTTTTTAGCGAACTAGTGAGTctgccaaatcagaggcagtagggatgaccagggatgttatcttgataagtgtgggaatttgacaattttctgtCCTGGTAATCATataaaatgtaactagtacttttgggtgtctgggaaaatatatggagtaaaaagtcaAATTTAGGCGGGGGAATTTggtgaaataaaagtaaaaattgtcaaatataaatagttaagtaCAGATACACCAAAACTTAAGTAAAAGTGATTTAAataactacttaagtactttacaccactgcatgcaTCCACTCCGTGTGTCAGCATTGCAggctggtggtgtgatggttgggGTGTGTTTTCAGGGCACACATTGGGCCCCTTGATAAAAGTTGAGCAATGTTTGAATGCCACAGGATACCTAAACCATCATTGGCAATCAGGTGCATCCCTTCATGGCAGCAGTTTATCCCTCCCACAAGGCTTGTCCAGGAATGGTTCCAATAACATTACACTGAATTCACTGTAATTGTGCATCTGTGGGAGGAGATGGAACGAGCTATTCAAAGTAGATCCActcccagccaacttgacacaattgtaggaagcattggagtccacatgggccagcatccctgtgttctgaggacaaagggggtgcaactcaatattaggaaggtgttcctaatgttttggacactcagtgtatatcaggtaaggatggtgtgatgatcagtttttagCATTAGTTTGGGTGGATTATTTTATATTACTTAACAACTTTGTTTAATGATGAACAAGCTATGAATCGAGTACTTGTTTAATAAACTGTATTTTAATATTAGATTCATTATTGTAGTCATTGATGATGAATGTATTTGAATAACTATTGAAGTTAATTGATCTGTTGGCAGGGAGccagcggttaagagtgttgggccagtaactgaaaggtcgctggtttgaatccagagCCGACTACGTGAATAATCTgtcattgtgcccttgagcaaggcaattaacccttatttgtcctgtaagtcgctctggataagaacatctgctaaatgacacaaatataatgAAAAATGTTTGTACATGAATATATGCTGGGCAACCACTTTTTTCtcttaaataaaataaactgtttgaagtgaaatactgtatatacaatacacaacattaccactgtgtttaccctggtcagagagacagggactttgcagctgctgttgttaGTGCAATATAGCATGTCAGCTCGCTAATGATTAGGTGTACAGGCTGCTacatttagtttttgcttgtgtcgGTCAGATGTGATGTGTTATCAGGCTAAATGACTACCAGAGGGAAGTGGAGAGCGCGTCTTGATCTTTGTGAGTTGTGCCCGGCCCGGCCGACATGGTCAAGAGAGGCAATGGACATGCAGCAGCACTCCGATGTGAAGAACTGTACTAAAATGTACGATTGTAGTACAATGAAAAAAATatagcatggtatttttgtggaatggtagtgaccaaaaaacatgttttccattGTACTAGACCTAGAAACAAAACTGCCAGATGTGTCATAATAGCCTGGAAGTAAAGCTGCACTGGGAGAATACATTGAAAACATTCAGCAGGGTGGAAACAATCACAGTAAAACATGATTTAAATGTATTGTTGGAAGGGCTGTGGTCTCCATTCATGTAATACATTAAATATATACATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730283 lncRNA upstream 7356 5453597 ~ 5454546 (+) True G1512261
TU1730266 lncRNA upstream 33530 5427362 ~ 5428372 (+) True G1512245
TU1730264 lncRNA upstream 45726 5415678 ~ 5416176 (+) True G1512243
TU1729957 lncRNA upstream 132346 5324773 ~ 5329556 (+) True G1511978
TU1729858 lncRNA upstream 137776 5281445 ~ 5324126 (+) True G1511882
TU1729876 lncRNA downstream 29440 5704931 ~ 5706142 (+) True LOC110519537
TU1729956 lncRNA downstream 172338 5847829 ~ 5862162 (+) True G1511977
TU1730438 lncRNA downstream 217116 5892607 ~ 5892871 (+) True G1512406
TU1730439 lncRNA downstream 217494 5892985 ~ 5893193 (+) True G1512407
TU1730442 lncRNA downstream 219993 5895484 ~ 5896813 (+) True G1512410
XR_005037318.1 mRNA upstream 186702 5267808 ~ 5275200 (+) True LOC118941027
XM_036951170.1 mRNA upstream 200385 5152955 ~ 5261517 (+) False LOC110510710
XM_036951172.1 mRNA upstream 200385 5249751 ~ 5261517 (+) False LOC110510710
XM_036951103.1 mRNA upstream 418310 5018351 ~ 5043592 (+) False LOC110495595
XM_036951191.1 mRNA downstream 22169 5697660 ~ 5702970 (+) False LOC110513970
XR_005037314.1 mRNA downstream 29260 5704751 ~ 5708465 (+) False LOC110519537
XR_005037313.1 mRNA downstream 29262 5704753 ~ 5708466 (+) False LOC110519537
XM_036951183.1 mRNA downstream 248012 5923503 ~ 5942698 (+) False LOC110512403
XM_036951184.1 mRNA downstream 248013 5923504 ~ 5942698 (+) False LOC110512403
TU1730220 other upstream 218475 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 355814 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 435572 5019260 ~ 5026330 (+) True LOC110495595
TU1730118 other upstream 593894 4865995 ~ 4868008 (+) True G1512113
TU1730000 other upstream 845153 4610018 ~ 4616749 (+) True G1512020
TU1730480 other downstream 502349 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 723272 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 726582 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 765361 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 875154 6550645 ~ 6570479 (+) True LOC110514219

Expression Profile