RNA id: XM_036951186.1


Basic Information

Item Value
RNA id XM_036951186.1
length 4937
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110513970
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5461902 ~ 5702970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCGCGCAGGCGCACATCATTCTTCACAATAAAGGAAACGTCAGAATTGTGCAGTCGAGATAACTACTTCTGTGTCCGTTTCAAATATATGATTACTGGCCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagtagaaacctacagtcactgggtcctgattggGTCCTGATTGAGCCCAGTTTacactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacattggagctgaatgtcaacattaaagatgaagaagaggaggaggagattggGGAATCTGTTAGTCATGGACGACTAGAATTAAGTCTGAAGCCGGTAAATCCAACAGTGACGACAAACCCAACccgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggaacccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtccaacactggagctgaatgtcaacattaaaggtgaagaagaggaagagaagattgGGACATCTGTTTCTCATGgagaccaTGTTGAGACACTCTCTACATCCAGAGAGCAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGACTTTCCCAATTCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatccGTATTCCTgtactgactgtgggaagagattcacaaCATCAAGGAATCTGACAGTTCATCAGAGTGTGCACAATGGagtgaagccttactcctgctctgactgtgagaAGAGTTTTTCTCGAATGGACTTCTTAAAAACACATACACGTAGACATACAGGActgaagccttactcctgctctgaatgTGTAAAATTCTTCACAACATCAGCTGAGCTaaaagttcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaagactTTCTCTCAACTTGGCCCCTTAAAAagacatgaacgtatacatacaggagtgaagccttactcctgctctgactgtttAAAAGGCTTCACAACATCAGCTGAGCtaaaaattcatcagagaacacactcaggagagaagccttactcttgctctgactgtggaaagactTTCTCTCAACTTGGCCCCTTAAAAAGACATGAActtatacacacaggagagaagccttactcctgctctgactgtggaaattGCTTCACAACATCAGGTCAGCTagaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctctATTGTTTAActtaaaaacacatgaacgtatacatacaggagtgaagcctttctcctgctctcactgtgtaaaatgcttcacaacatcaactgacctaaaagttcaccagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaacTGGGCACTTTAAAACaacatgaacgtatacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaacTGGGCCCCTTAAAAAGCCATGAATTTATACATACAGGAGTGAAGCctttctcctgctctgactgtttaaaatgcttcacaacatcagctgagctaaaagttcaccagagaacacacacaggagagaagccttactcctgctctgactgtggaaaaagtTTCTCTCAACTGATTCTCTTAAAAAGACATGGACGTATACATACAAGagtgaagccttactcctgctctgattgtgtaaaatgcttcacaacatcaggtcagctaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctctACTGTGCAActtaaaaacacatgaacgtgtacatacaggagagaagccttactcctgctctgactgtggaaagagtttctctctACTGTGCAACTTAAAAACgcatgaacgtatacatacaggagttATTCCTCACCGCTGATCTGACTCTAGAAACTGTTTTAAAACAACAGCTGAGCTAAAAGGTCatcagagacacacaggagaggaATCTGACTTCTGCTCTTAATATGTCAAGAgtaactcaagtaaaagtgaaagtcaccaagtagaataccacttgagtaaaagtatttggttttaaatatacttaagtatcaaaactaaaagtatgaatcatttcaaattccttaaattAACCTCTACGGGATGGGTGTTCCTAAAACAGGACAGTTGCTAATATGACTATAATGACATTGTATTCAACAGCTAACTTTctgggacatagacatgtcttttatatgggcagaaagattAACAAAAATTTAAGCAAACTTCAGTGTCGAATTAACAGTAGcttttacagtgaaaaaataccatgcaaGTGTTTGAGTAAAGTGTAAAACAACTTATCactgcaactggtttgatacattcaaaCCAGTTGATTTGTCATCCttagggtcccagagataaaatgtagcatagtttcgtttgataaaatctatttttattttaaatgtaggaactgggtacTACATTTTTGAACCCCtgttgtctctggctccacacctaCCCCGCCTgaccatctagatgtgtgaaagttagtgaataagctaatgatccatcatgtatgaaattcctgtcagtctgtaaacttaaatgttttattaccatagagtttttgtatgttctctatagttttGTActtaaatgtatcaattgaccaattcaggACATTTGGGgaaactcctggcagacttgatacagtccagtaatgtaattcttcactggatcagtcaAACTtttcacacactgctgccatctggtagccaaaatctaaattacacCTAGACTCCTTTCTGAAAGTATGGCCTTTCTTGCATTTCAAAGTTAATGAAAAAAAGTTTTTGTTTGTATgatttttaccagatctaatgtgttattctcctacatgaatttcacatttccacacactTCAAATTGTTTCGTTTCAAAAGATAAAGAATATGCATGTCTTTGCTTCAGGTGCTGAGCTACAGGCTACAGATTTGGGTCATTTTAGGTGGAAATgtaaagagaaaaaaaagggtACAATCCTTTAGAGGTTTTTAGCGAACTAGTGAGTctgccaaatcagaggcagtagggatgaccagggatgttatcttgataagtgtgggaatttgacaattttctgtCCTGGTAATCATataaaatgtaactagtacttttgggtgtctgggaaaatatatggagtaaaaagtcaAATTTAGGCGGGGGAATTTggtgaaataaaagtaaaaattgtcaaatataaatagttaagtaCAGATACACCAAAACTTAAGTAAAAGTGATTTAAataactacttaagtactttacaccactgcatgcaTCCACTCCGTGTGTCAGCATTGCAggctggtggtgtgatggttgggGTGTGTTTTCAGGGCACACATTGGGCCCCTTGATAAAAGTTGAGCAATGTTTGAATGCCACAGGATACCTAAACCATCATTGGCAATCAGGTGCATCCCTTCATGGCAGCAGTTTATCCCTCCCACAAGGCTTGTCCAGGAATGGTTCCAATAACATTACACTGAATTCACTGTAATTGTGCATCTGTGGGAGGAGATGGAACGAGCTATTCAAAGTAGATCCActcccagccaacttgacacaattgtaggaagcattggagtccacatgggccagcatccctgtgttctgaggacaaagggggtgcaactcaatattaggaaggtgttcctaatgttttggacactcagtgtatatcaggtaaggatggtgtgatgatcagtttttagCATTAGTTTGGGTGGATTATTTTATATTACTTAACAACTTTGTTTAATGATGAACAAGCTATGAATCGAGTACTTGTTTAATAAACTGTATTTTAATATTAGATTCATTATTGTAGTCATTGATGATGAATGTATTTGAATAACTATTGAAGTTAATTGATCTGTTGGCAGGGAGccagcggttaagagtgttgggccagtaactgaaaggtcgctggtttgaatccagagCCGACTACGTGAATAATCTgtcattgtgcccttgagcaaggcaattaacccttatttgtcctgtaagtcgctctggataagaacatctgctaaatgacacaaatataatgAAAAATGTTTGTACATGAATATATGCTGGGCAACCACTTTTTTCtcttaaataaaataaactgtttgaagtgaaatactgtatatacaatacacaacattaccactgtgtttaccctggtcagagagacagggactttgcagctgctgttgttaGTGCAATATAGCATGTCAGCTCGCTAATGATTAGGTGTACAGGCTGCTacatttagtttttgcttgtgtcgGTCAGATGTGATGTGTTATCAGGCTAAATGACTACCAGAGGGAAGTGGAGAGCGCGTCTTGATCTTTGTGAGTTGTGCCCGGCCCGGCCGACATGGTCAAGAGAGGCAATGGACATGCAGCAGCACTCCGATGTGAAGAACTGTACTAAAATGTACGATTGTAGTACAATGAAAAAAATatagcatggtatttttgtggaatggtagtgaccaaaaaacatgttttccattGTACTAGACCTAGAAACAAAACTGCCAGATGTGTCATAATAGCCTGGAAGTAAAGCTGCACTGGGAGAATACATTGAAAACATTCAGCAGGGTGGAAACAATCACAGTAAAACATGATTTAAATGTATTGTTGGAAGGGCTGTGGTCTCCATTCATGTAATACATTAAATATATACATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729934 lncRNA upstream 12762 5645824 ~ 5651171 (+) True G1511955
TU1730299 lncRNA upstream 69217 5521390 ~ 5594716 (+) False G1512276
TU1730332 lncRNA upstream 70261 5591646 ~ 5593672 (+) True LOC118941025
TU1730327 lncRNA upstream 83886 5568478 ~ 5580047 (+) True G1512300
TU1730300 lncRNA upstream 99626 5521390 ~ 5564307 (+) True G1512276
TU1729876 lncRNA downstream 29440 5704931 ~ 5706142 (+) True LOC110519537
TU1729956 lncRNA downstream 172338 5847829 ~ 5862162 (+) True G1511977
TU1730438 lncRNA downstream 217116 5892607 ~ 5892871 (+) True G1512406
TU1730439 lncRNA downstream 217494 5892985 ~ 5893193 (+) True G1512407
TU1730442 lncRNA downstream 219993 5895484 ~ 5896813 (+) True G1512410
XM_036951180.1 mRNA upstream 26743 5526440 ~ 5637190 (+) False LOC110495587
XM_036951179.1 mRNA upstream 26743 5526450 ~ 5637190 (+) False LOC110495587
XR_005037316.1 mRNA upstream 70589 5591627 ~ 5593344 (+) False LOC118941025
XM_036951258.1 mRNA upstream 87454 5573391 ~ 5576479 (+) False LOC118941022
XM_036951259.1 mRNA upstream 87454 5573404 ~ 5576479 (+) True LOC118941022
XM_036951191.1 mRNA downstream 22169 5697660 ~ 5702970 (+) False LOC110513970
XR_005037314.1 mRNA downstream 29260 5704751 ~ 5708465 (+) False LOC110519537
XR_005037313.1 mRNA downstream 29262 5704753 ~ 5708466 (+) False LOC110519537
XM_036951183.1 mRNA downstream 248012 5923503 ~ 5942698 (+) False LOC110512403
XM_036951184.1 mRNA downstream 248013 5923504 ~ 5942698 (+) False LOC110512403
TU1730336 other upstream 50897 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 420506 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 557845 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 637603 5019260 ~ 5026330 (+) True LOC110495595
TU1730118 other upstream 795925 4865995 ~ 4868008 (+) True G1512113
TU1730480 other downstream 502349 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 723272 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 726582 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 765361 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 875154 6550645 ~ 6570479 (+) True LOC110514219

Expression Profile