RNA id: XM_036951191.1


Basic Information

Item Value
RNA id XM_036951191.1
length 1940
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110513970
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5461902 ~ 5702970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGCGACCCCTTCTCGTGCACGGACGGTGTTAGTGGAGGAACAGGAAGTTCCGGACAGAAGCGCACCATTATTCAGTgtaaagaaagcgccagaacgGTGCAGTCAAGAAGATAACATTATTGTCCTTTTCTATTTATTACTACAGGCCGACTCAGATCAAGTCTGAGGCCGGTAACTtcaacagtgaggacaaacctacagtcactggatcctgattgtgacagtgaagcccagtttgcactgcaggatccatagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatattgacattaaagatgaagaagaggaggagaagattgggGAATCTGTTAGTCATGgagaccaTGTTGAGACATTCTCTACATCCAGAGAAAAACAGCAGGAAGATCATGGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAATTCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatccGTATTCCTgtactgactgtgggaagagattcacaaCATCAAGGGCTCTGACAGTTCATCAGAGAGTGCAccctggagagaagccttactcctgctctgactgtggaaagattTTCTCTTGTCCGGGCCACTTAAAAAGACATGAACATATACATACAGGAGTGAAGCCTTACTCTTGCTCTGACTGTGTAAAATGCTACACAACATCATCTGAGCTAAAACTTCATCAGAGagtgcacactggagagaagccttactcctgctatgactgtgggaagagtttctctcgACAGGGTTTTTTAAAAGCACATGAACTTATACATACAGGAGTGAAGCCttattcctgctctgactgtgggaagattTTCTCTCAACTGGGCCACTTAAAAagacatgaacgtatacatacaggggtgaagccttactcctgctctgactgtgtaaAATGCTTCACGACATCAACTGAGCAAAAAGTccaccacagaacacacacaggagagaagcctttctcctgctctgactgtgtaaaatgcttcacaacatcaactgacCTAAAAGtccatcagagaacacacacaggcgagaagccttacttctgctctgactgtggaaagagtttctctcaaTCGTGCCACTTAAAAAGACACCAAGGTAAACATAAAGGAGAGAAGCTTTACCACTGATCTGACTGTAGAAAATGTTTCAAAACAACAGCTGAGCTAAAAGGTAATCAGAGAACAGAcaccggagagaagccttacttctgCTCTAAATTTGGCAAGAGTAactcaagtaaaagtctaaaggtaTTCTGTTGTAAATATACCTTCGTTTCAAAAGTGAATAATTTCAAATTGCTTAAATGAACCTCTACGCGATGGGTGTCCTCTAACCAGGACGGTTGTTGCTAACGTGCTccaatgtgactagaatgacgtatacaacagccaactttccaggacatagacatgacTTTATAtcgtcagaaagcttaaattcttgtaaatctaactgcagtgtccaatttaaCAGTAGCTATTTCATTGAAAAAAAATACCGTGCTATTGATGAGTAGAGTGGACAACAACTGTTATCATGGCAACTGGTAtaatacattcacctctgaaggtcaATAATGTACTTGCATTCAGTAATCtttctctgatttgtcatcctgagggtcccagagatcaaatgtagcatagtttaatttgctaaaatgttcaaatgtaggaactgggttccaCATTTTGAACCCCtgttgtctctggctccacacctaCCCCGcctggccatctagatgtgtgaaagttagtgaaTAAGCAAATGATCCATCGTGTATGAAATTCCTGTCAGTGTGTAaacttaaatgttttattaccatagcatttgtatatgttctctatagtttTGTActtaaatgtatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729934 lncRNA upstream 46489 5645824 ~ 5651171 (+) True G1511955
TU1730299 lncRNA upstream 102944 5521390 ~ 5594716 (+) False G1512276
TU1730332 lncRNA upstream 103988 5591646 ~ 5593672 (+) True LOC118941025
TU1730327 lncRNA upstream 117613 5568478 ~ 5580047 (+) True G1512300
TU1730300 lncRNA upstream 133353 5521390 ~ 5564307 (+) True G1512276
TU1729876 lncRNA downstream 1961 5704931 ~ 5706142 (+) True LOC110519537
TU1729956 lncRNA downstream 144859 5847829 ~ 5862162 (+) True G1511977
TU1730438 lncRNA downstream 189637 5892607 ~ 5892871 (+) True G1512406
TU1730439 lncRNA downstream 190015 5892985 ~ 5893193 (+) True G1512407
TU1730442 lncRNA downstream 192514 5895484 ~ 5896813 (+) True G1512410
XM_036951185.1 mRNA upstream 22169 5461902 ~ 5675491 (+) False LOC110513970
XM_036951187.1 mRNA upstream 22169 5461902 ~ 5675491 (+) False LOC110513970
XM_036951189.1 mRNA upstream 22169 5461902 ~ 5675491 (+) False LOC110513970
XM_036951186.1 mRNA upstream 22169 5663933 ~ 5675491 (+) False LOC110513970
XM_036951188.1 mRNA upstream 22169 5663998 ~ 5675491 (+) False LOC110513970
XR_005037314.1 mRNA downstream 1781 5704751 ~ 5708465 (+) False LOC110519537
XR_005037313.1 mRNA downstream 1783 5704753 ~ 5708466 (+) False LOC110519537
XM_036951183.1 mRNA downstream 220533 5923503 ~ 5942698 (+) False LOC110512403
XM_036951184.1 mRNA downstream 220534 5923504 ~ 5942698 (+) False LOC110512403
XM_036951181.1 mRNA downstream 220538 5923508 ~ 5949854 (+) False LOC110512403
TU1729877 other upstream 26327 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 84624 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 454233 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 591572 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 671330 5019260 ~ 5026330 (+) True LOC110495595
TU1730480 other downstream 474870 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 695793 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 699103 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 737882 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 847675 6550645 ~ 6570479 (+) True LOC110514219

Expression Profile