RNA id: TCONS_00047699


Basic Information

Item Value
RNA id TCONS_00047699
length 5269
RNA type mRNA
GC content 0.36
exon number 10
gene id XLOC_024036
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19149241 ~ 19192303 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACACCGAACGACTCTTGAGACCCACGAGAAGTTCATTGAAGAACTACATTTCGACACAATGAGAACTTTATCACGCTTGTTTGCTAGTTTCCCACTTCTTGCGGCGTGTTTTCTGGCTGTTTCTGTCTCCACAGCGAGCGCTGACTTCTGCAAAGTAAATGTGTGTTTGAATGGAGGTACCTGTGTGTCTGGAGCAGAAAAAGATTCCTACATCTGCATTTGTGCTGACGGCTTCACTGGAAACACCTGCAACGAGACTCAGATTGGCCCCTGCAACCCAAACCCCTGTAAAAATGATGGCGTGTGCGAGATCATCTCCAACTCTCGACGAGGAGACGTTTTCAGCGAATACATCTGCAAGTGTCCAGTGGGCTTCGAGGGAATCCACTGTCAAAACAATGTGAATGACTGTGCGGGTCAGCCCTGTCTAAACGGAGGCACCTGTCAAGATCTTGATggggacttcaactgtaaatgtccCTCGCCCTATGTTGGAAAACACTGCAATCTGCGATGCATCTCTCTGCTGGGAATGGAAGGAGGAGGAATTGCTGAGTCTCAGATCTCTGCATCTTCAGTGTACTATGGCATTCTGGGACTGCAGCGATGGGGACCCGAGTTGGCTCGGCTTAATAACAAGGGACTTGTTAATGCTTGGACCTCTGCAACGCATGACAAAAACCCCTGGATTgagGTCAACCTGCAGAGGAAGATGCGCTTCACTGGCATCATTACCCAGGGTGCCAGTCGCATGGGCACAGCCGAGTTCATCAAAGCCTTCAAGGTGGCGTCCAGTTTGGATGGAAGAACCTACACCATGTACAGACCTGAGGGCCAGAGCAAAGATATGATTTTTGTTGGTAACATGGACAATGATGGGACAAAGACGAATTTGTTCGAGCCTCCAATCATCGCTCAGTTCCTCCGGATTGTTCCTGTGGTGTGCCGTAAAGCCTGTACTCTGAGAATGGAGCTGGTCGGCTGTGAACTCAACGGTTGCTCCGAGCCGCTCGGCGTCAAGTCTCGGCTCATCAGTGACCGGCAGATGACATCGTCCAGCGCTTTCCGCACCTGGGGCATTGAGGCCTTCACCTGGCACCCGCATTACGCCCGTCTGGACAAACAGGGCAAGACCAACGCCTGGACGGCAGCTACAAACAACCGCTCCGAGTGGCTGCAGGTGGATCTGCTCAGACCAAAGCGCATTACAGGAATCATCACACAAGGAGCCAAAGACTTCGGCAATGTGCAGTTTGTATCTGCCTATAAAGTGGCTCACAGTGACGACGGCCAACACTGGACGATACTCAAAGAAGACAAGACCAAAACAGATAAGATCTTCCCTGGCAACAGTGACAACAACGTGCACAAAAAGAATGTGTTTGACCCGCCCTTCTACGCGCGATTCGTCCGCGTGCTGCCGTGGGCGTGGCATGAGCGCATCACTCTGCGAATGGAGCTGCTGGGCTGCGACGAGTAAACCCCGCCCACTTCTCTCTCAACCTCTCCTCTCTATTTCTCCTTCTCCCTCTTTATACTTCCCATCATTCCTTCTTTTCTCAAACACACCTGCACTGCCTCACTCTCAGCAACAGAGGTCACCATCGCCACACGAGCCAAACCACCACCAACAACACACTAAGCTCAAACCCACAGCGTCACCCTTCCTAAAACAATTCAATACTTATATACAGTGTTCTCCGCTAATATTGGCAGCTTTGGTAagtaaaactatattttaaaatatatgtttatatatattggCATTAGTGAATATGAGCAAGGAATACTGGGGTGAAAATGAGCGAGTTTGTCTTGATATTAcctcatatttatattttaaaaggttaaatatcaatgtgaatataCTTATTCCTTGAGGTCACAATATTTGTGGCACAAAAATGTGACCCTAGACAGCAAAGCCAGTCATTAGAGtctaaaaagagtttttttttttaaatacattatttgaatctgaATAAATTAGCTTTCCACTGATGTTTGATGTATGAGGATATTACAATATAAGGTTGTGATACAACTGGTATAACATCTacaatctgagggttaaaaaaatcaGAAAATTGCTTTTAaggttgtccaaattaagttcttgaCAGTGTATACTAATCAAGAATTACATTCTGATAAatttactgtacactgtaaaacccaaaaagttaatgTAACTCAAAACAGTTGAGGAAACCAAttgtaacaaaccatttaagtttaaaaactaatcctaatgacaACTGTGAACTCACTTGATTTTAATAAATGGATCAGTTTGACAGTAAAACCAGATAcatgaagaaaactcaaaccaactgagtactgtaaaacccaataagttaaggcaactcaaaccatttgagttaaaaaaactaatctataagagtaccgtgaacttactccatttaagttgaagtaatgaagtatttaattaattcattatcttcaacactgagttcaaaactcttttcaaatgagtagaattaattttcagtaaattttgagttaactacactcctttcatttgataaagtggaAATATGATCTTTGCTTTATATTTTAACGTTTTTTGGCattaaagaaaaatgtataattttgacccataaaatatgaaattaagcaatatattttcaggcacgtagccagcctggtgaaagcggtggttctttttttttaagtagatttttatttttattttattttttacctcattttgaatgtgattatgaggtttaaatactccattctgtgacattttaggcactaTTTTCAGCTGGATTGGCTTGTTGGATGATCATCAAAACCACGATTTTTGATGGATCAAACGTCTttctaaaaataaagattaaaacacaaatttattacatcttATATCAGTAGAAAATAAATTTCAgacaattgtcatttattaggcaaatcacaaactggccagcacattcagctTTCATCAGTCAGAATTTTATATTACAGAGCTTCACAATATTTTCCAAGtctaaaaagtacatttgaaatttCATGGATAACCACAAAAGCCTAATTAGTATTCAAATTAATTGCTATGTGattgataatttttttctatCAAGAATAATGTCCAAGATTTAGAATGAATTTTTTCtgtatttaacaacaacaacaaagtagttgacttcacttatgtcacattctgcttggtcttaaagccttcgaTGGGTTAATTCCACATTTTATGATGGCATAgctgtcaaaataggacaaatgagctcatgtatggggcaaattctggacctttgtcagtgggggGTGGGTgataaaatgtatcttttttgTTAATATGTTGAACAAAagattaaatgataaaaatacatatttaccaAAGTTGCCAATATTATTGGAGGACACATTATGCCAAAGTGAcaattcacccaaaagtgaaattCTGTCAACAATTAtgtttttccaaacctgtttgagtttctttcttccattGAAAAATAAGATGAAGAAACTtgtaaaccagtaaccattgacttccatagtatttttccccAAATAACATtgttcataatatcttcttttgtgttcaacataagaaagagaCATACATGGTTTGAAACCATTTGAAGGTGAGTAATTGTTAATGTTTAAACTACCttcttattatttattcaccCCTATAAGTATTTCAGACCTATTAAACAGCCAATCATAAAGAGGTGATCttgtaaataaaagtaacagtttATTACTTTTCATATCAATCAGTGTGTTAGTTTGCTTGTAAATGCATTCAAGCTGTTTTATATCCCACCGTATGAAGTAGTTGAATTAGGTAGTCCGAAAATAATGTTGTGCTCTTTGCTGATTTATATATTATGTAAGGAAAGCTGCCATTTGATCTGTTAAAAACAATGTTTGCtttaaatcaagttttttttttttttttttttttttttaccgagctgccatattttacagaaaataagtCACAGCAGGTCAAAATTGAATTTTTGAGAGGAAAATCATtgcacaattacattttttatcatttaagaaTTAATGTAAAGTAGGGTATTACTCACACAGACTATTTGAAATTTGATAATTTGGATCTTCTAGATTTAATaggtttataaatgttttattaagatttaatttgtttaattttacaaCCTTTCTATAAAAgaatttgtcatgtttttttttttttttttttaaatgacatttggtcaaactaataaatgttttcatttgttcagATTAAAACTAAATCAGggttatttaatcaaatattgatttctaaacttctgaaaaaatgtaaacattcatattgttgaaaatatttatttaaaatctaattaaatggTGTTTTGTAAACCTTTTTGTGAGGTTTTTGTTACCCCGAAGTGATGATATAAAAACTGTGACTTATATTCCTGAAAGTACGGTAAAGCATTTTTACAACCTCAACTACATTAAAAATGTGACACTCaattgtctattattattattattatttgatgattttatttgattttggtgCCTCAGATCTCAGGTGCAGTTGAATCAATTGCAGTGTGCTACTGAATTTAGTAGATTTTTTTAGCGTAATTTTATAACATATCAATTCTGGTACAAACAAAAACCACCTTCAAAAGCCAAAGCGGTCTCATATTTCTTCtgttagcaattttttttttataaagggccACACATTTACAGTATAAGCTTTGACGTCCCAGTCGTATAATGAGATGTATGATGGGAGCAAATCTAATTTCAGGATAATTTCTACGGTGGCACTGAATCTGGAATATGACCATCCAATTTccataatgttttcaaaatgattgTAATCCCCCCTTGGCCCCCGAAGCATCCACTCGAATAAATTTACACTTTTGGGCTTGTGCAATATGATATGAGTATTAATATGAATTTAATATTAATGGAGCTTAAGGAGAAAATATACGAGCAGTATTCTCTGTAGAGATTTGAAGTGGTTTTCAAGGTAACAAACACTGAAGAATATTCTAATAATCCAGCATGATTTAGGCTGCATGTTTGCTTTTGATCGAGTCATTTTCATTGCAGTAAAGGACTTTATTTCTATTCAgtgtgctttttctttttttgtattatttttaaatgcctCGCACTGTAGCACAATTCTTGTGTTCAGATTGTTTAGATGCATTTCCTTGGTATCTCTTGAAATATTTTCCTCATGTTTTCAACTgtagaaagaaataaagaatatATCAATATTTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-137 Predicted to enable calcium ion binding activity. Human ortholog(s) of this gene implicated in temporal arteritis. Orthologous to human MFGE8 (milk fat globule EGF and factor V/VIII domain containing).

Ensembl:

ensembl_id ENSDART00000067324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049222 lncRNA upstream 224935 18920543 ~ 18924391 (+) False XLOC_024031
TCONS_00049223 lncRNA upstream 224935 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047686 lncRNA upstream 224935 18921825 ~ 18924391 (+) True XLOC_024031
TCONS_00047684 lncRNA upstream 263757 18884678 ~ 18885569 (+) True XLOC_024029
TCONS_00049221 lncRNA upstream 404297 18744021 ~ 18745029 (+) True XLOC_024027
TCONS_00049224 lncRNA downstream 164151 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049225 lncRNA downstream 251758 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00047713 lncRNA downstream 360133 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00047728 lncRNA downstream 541967 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047734 lncRNA downstream 678679 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00047696 mRNA upstream 31199 19105804 ~ 19118127 (+) False XLOC_024035
TCONS_00047697 mRNA upstream 31601 19106574 ~ 19117725 (+) True XLOC_024035
TCONS_00047694 mRNA upstream 48857 19095231 ~ 19100469 (+) False XLOC_024035
TCONS_00047693 mRNA upstream 103349 19041329 ~ 19045977 (+) True XLOC_024034
TCONS_00047692 mRNA upstream 127503 19008497 ~ 19021823 (+) True XLOC_024033
TCONS_00047701 mRNA downstream 9038 19201231 ~ 19205875 (+) True XLOC_024038
TCONS_00047703 mRNA downstream 45982 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047702 mRNA downstream 45982 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047704 mRNA downstream 45987 19238180 ~ 19347007 (+) True XLOC_024039
TCONS_00047705 mRNA downstream 293005 19485198 ~ 19521245 (+) False XLOC_024042
TCONS_00047695 other upstream 37518 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 660320 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1051465 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1270694 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047656 other upstream 1540595 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047707 other downstream 297357 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047732 other downstream 582366 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 1400290 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 1411703 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 3033609 22225802 ~ 22238992 (+) True XLOC_024087

Expression Profile

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