RNA id: TCONS_00047705


Basic Information

Item Value
RNA id TCONS_00047705
length 3418
RNA type mRNA
GC content 0.44
exon number 22
gene id XLOC_024042
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19485198 ~ 19521245 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CgggcacaaccatttcttctctggccaaactGGCCAAAAGGATCAATGTGTACTGGTATTGTTTAgatcacaaaacaaacacacacacacacacacacacacacacacacacacacacacaaataaaaacctGAACAGCAAAgacataacaaatatatatacattttatttggcaaaaaaaaaaaaatcttaatatggTTGACTTGATGATAATTTTCTTGAATTAAGGATATCCCGGAACTAAACAATCAACCCACTTCAGCATCAAGCACTAGCCTCTGTCCTCAGTTTCTTGAGGATTTCCTCCTGGCTCACATCTGCCGTCACTCTGATCACCTTTTCTCTCGATTTGGACCCCTGTTGTGCAATTGAAACCacattaatgattaaaaaaagcatataatTAAGTGTAGCGGCCTGAAAGCACTTAAATAACGGCGTTTATAGGAGCTGACCTTGTCTAATGATACTTCGCTTTTCTTCAGCTGCAGGACTTTGGATAAAAAGCGCAGGAGTTCAGCGTTTGCCTCTCCATCTGTCGGCGGCGCAGCAATGGCGACCCCCACCGCCTCCTCAGACACATCTGGCAAAACAAGAGGAAAAACTGGGGTTACTGTGAACCAACTCCCAACAGATAACGAAACACAGATCCCTCCTCCAAGATGCAGTTAAGTTCCTCCTATTTTCATCCAGCCACAAACTGGCTGTTCACACAGAGACTGAGCTCAAACACAGCTGCCAAAGAGACCCATCTTCATCTCCACATGCAGCACAAACACACCATCTGGATTCCCTAAAACTCCCAGTCGACAGTGAAGAACGGCTTTATCATGGAGAACAGCTTAAACCAAGAAGCAGAGGAAAATCCCTACCTGTGTTTTCAGAGAACACCATCTCTCAGACGTAAATGGAGAAAGCGCTATGGAGGCCTGGATGGAAACAAACTGCTGGAGCCGAATAAAGAGGACGACACAAGAGAGATTGGAGAGCTGACGGAGCCACTGAAGTTGAAGGAAACTAAATCCGCAGGGAACATTCCTCAACATGTGCCAAGAAATACCTTTCCACAGCAGAGGCCAGTCAATTACGTCTCACCAGGCTCTACAGGCATGCCATCTTTTATAAGCAATGGGGGCACAAAACGGACTGTTCCAGAGCATGAAAAACTTCATGCCGGCCAAGCGTGGCAACACTTGGGCCGACAAGACACCCATCAAGgacattttaagaaaaaagtGGCTGCTGATGTGCTGTTTGATAGTTTCGCCTCTGGAGGAAGAGTTAACTGCAATCAGTTTTTTGAGGCCCTGTGGAGCTCAGGGATTATCCGAACAGATCCACGGATTAAAGACTGCTACAGCCTGATGAGAAAACTTCAGGAAGCGGATGGAACGGTTGACAGGAGCATGTTTCACAGGTGCGTGACAGGCTTTGTGTCGTTCATCCTGAAGGCACTGCAGGGGCGATTTGTCATTCCTGATTTCTCGACTTTTGCAGAGGAAACACAAAAGCTGTTTATTAAATGCAAACAACTGTCCTCTGTGAAGGAGAAAGAAGATGTAGGAGACAGTGGCACAAAATGGGGCATTTCGGTGTGTACTGTAGATGGGCAAAGACTTTCTTTAGGAGACTGGGCTGAACCTTGCACTCTGGGAGAAATTTCCTGGCCTCTTATATACGGCCTGGCAGTGGATCAGCAGGGCTCAGACTACGTGCACAGATATGTGGGAATGGAGGAATATTCCAAATACGAGTCTCTGTTCACCCTGACCAAACAAGGTGTTCCTCATAGTCCGCTGGTTGAGACAGGAGCAATTATCTGTACTTCTTTATTACAGCTAGCAACAAGACCAGTCACTGATGAGGAGGAAAAGTATGAGTCTGTTTTGAATATAATCCGAAGACTGTGCAACAAGGAGCACGTAAACCTCAACTGCACCAGTTATCAAGACCTGCGAAAAGACATCGTCCGTCTCCACGCTCTTTCATTTTACTTGCAGGAAAAGAAATGCTTTCCAGAAGGTGTGGGGATCAATGCAACGCTGGATTTACTGTTGCAGtGTTTATCAACAGAAGTCACATGCGAGTCTGGTGCAGCTTTGGCAGCAACGCTTGCTAACGGAGGCCTGTGCCCGCTATCTGGTGACCAAGTGATGTCACCCCATGCCGTCCGCAGTACCCTGACCATGATGCAGGTGGCTGGCATGAATGATTATTCCAGAGCGTTTCATTTCAGGGTGTCTGTCCCTGCCAAGTCCAGTCAGTCTGGTGTTGTGCTGATGGTGGTTCCTGCAGTTCTGGGACTCATGTGTTGGTCACCTGGACTGGATTGCAATGGAAATTCCTGGAGGAGTGTTCATTTCTGTGAGGAGCTGGTTTCAACCTTCCAGCTGCACAGTTTTGACATCAGGACTCCCTTCAGGCAGGTGCTGTGTTACAGACAGTGGAAGGTGGAGTCAGAGGGGTACCAGATCATGAATGTACTGCTGGCTGCTTATAGAGGGGACCTGGTATCTTTGCGCAGGTACCTTCTGTCAGGAGCAGATGTGAATGCAGTGGATTATGATGGACGTTCAGCACTGCATGTCGCTGCCTCTGAGGGCCGTCTGGATGTCATCAGGTTCCTGGTGGAAAATGCAGGAGCAAACTGTCATCTGAAGGACAGGTGGGGAAAGACTGCCTTACAGGAGGCCATGAGATGCAATCAAGACCCTGCCATCCAGTTTCTAAAGAAGCACACAGATAATGAAGAGAGTTTATGATGACATACTCAGAACCCACTAAgtgcatttatttaaagatttgatATTTACATTTGAGATATGAAGAATGTTATAAAAAAGCACCAGAGGCTTGGATGGAAAATATTAGTGTGTTGGCAAAAGTCCCAGAAAGCCACTCACTGCTTATTAAGAATCACAAAAAGAGATTGAAACCGTGGTTTCTCAATAAATGCTTCAACAGCATGTGTTTACTCACACAAGATTATGAATGAATCTGTACAAATGTGGTCATATTTTGCTGTTGCTGTAGGGTAAACAACAGAGTAAACAACAGTGACGGGTGTTCACTGGATAAggctatttttatatatttgtaataaatgtaatgtcCAGCAAGTTGATGCATGTTTTATCAGTGACAAAAAAAGTTgtgctgcttttttattttttagagagagcaccatttatttgaaatgtaatatttcatACTGTTAAATTACATCTCATTTAGCTTTTGATTTTTCCTGaatatgataatttttttaaacttctgACCTGTACTGCATCACATTTTCTACAAATATCAAATTATTATTGCTCTACAAATAAGCagtgtaaaatctttttttacaataataacaaGAAATGTTTTTCAAACCATTTTTGATTTTCTGTTCTgaattttgattttaatt

Function

GO:

id name namespace
GO:0006537 glutamate biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0006543 glutamine catabolic process biological_process
GO:0004359 glutaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-106 Predicted to enable glutaminase activity. Predicted to be involved in glutamate biosynthetic process and glutamine catabolic process. Predicted to act upstream of or within glutamine metabolic process. Is expressed in brain; pectoral fin; and swim bladder.

Ensembl:

ensembl_id ENSDART00000156730

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049225 lncRNA upstream 39686 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 123111 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049222 lncRNA upstream 560807 18920543 ~ 18924391 (+) False XLOC_024031
TCONS_00049223 lncRNA upstream 560807 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047686 lncRNA upstream 560807 18921825 ~ 18924391 (+) True XLOC_024031
TCONS_00047713 lncRNA downstream 31081 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00047728 lncRNA downstream 212915 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047734 lncRNA downstream 349627 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00049226 lncRNA downstream 465823 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 465834 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00047703 mRNA upstream 138121 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047702 mRNA upstream 138121 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047704 mRNA upstream 138191 19238180 ~ 19347007 (+) True XLOC_024039
TCONS_00047701 mRNA upstream 279323 19201231 ~ 19205875 (+) True XLOC_024038
TCONS_00047698 mRNA upstream 292895 19149241 ~ 19192303 (+) False XLOC_024036
TCONS_00047708 mRNA downstream 1709 19522954 ~ 19536331 (+) False XLOC_024043
TCONS_00047709 mRNA downstream 1854 19523099 ~ 19537323 (+) False XLOC_024043
TCONS_00047710 mRNA downstream 8772 19530017 ~ 19535811 (+) True XLOC_024043
TCONS_00047711 mRNA downstream 19774 19541019 ~ 19556986 (+) False XLOC_024044
TCONS_00047712 mRNA downstream 19776 19541021 ~ 19556971 (+) False XLOC_024044
TCONS_00047695 other upstream 373390 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 996192 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1387337 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1606566 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047656 other upstream 1876467 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047732 other downstream 253314 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 1071238 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 1082651 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2704557 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 3066051 22587296 ~ 22594781 (+) False XLOC_024094

Expression Profile

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