RNA id: XM_021560766.2


Basic Information

Item Value
RNA id XM_021560766.2
length 1035
RNA type mRNA
GC content 0.41
exon number 3
gene id mzt1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6201385 ~ 6203248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCTCCAAATTTACATTGACGTCACTTCCTTTCGCTTGTGTGGTCGTTAGTAAGCTAACTAGCAAATTATATACTCATGGTAGACTTTATTAACAAATGTACTATTTCTAATTTATCCAAATGACGGGGTTGTGATAGTAGAAGTATTTTTGTAAATCAGCTTGAACTGTTGAAGTTGCTGTTGAGTTAATCTCGGAGGTCCCACACGAACTGATTATGGCTAGCAGTGCTAATGCTAACAACATGAATGCTGTCCGAGAAACGATGGATGTGCTGCTGGAGATCTCTAGGCTATTGAACACAGGACTGGACATGGaatctctgtctatctgtgtcaGGCTGTGTGAGCAGGGCATCAACCCAGAGGCCCTGTCCTCTGTCATCAAGGAGCTACGTAAAGCCTCCGATTCACTAAAAGCCTCTGACAACTGAAGATCTGAGACTGATCCCAACAAAGCAATTCTGCTGAGCGGAAGTCTTTTCACGCAGTCAAGTTTCACAATATTGCCAAATAGTGAGCGTCTATTACCCTGACCTATTCCTCGTGCCTCTGGATTTGATCCCTGGCTTCATTTGAAGAAAAATGGTGTGTGTTTAACATTTGGTCTGGCAACATCAGTGGCCAATTCTCCTTGTGTTCCTGTCATCAGCTTGGTGTGCAATCTGACAATATGAATGACTGCAATGCCCTGATATCCAATGTTTcagtacccctccctccctcaatcatATAGGTTGTCAGTTCAGTCGTCTTTCTTCTGACTGAAGGAAACCTAATGATTGGCACTCCCCCGTCATCACACAGTGCTACAATGATGGGTTGTTTTCCATTCCTTCATGGCTTTTTGgacgtgtaaaaaaaaaagtcttATTTATTGCGAATTGTGTGTAGTTTTATATGAATTTAATGTCCGTTTTTTTCCTTCAATGTCTGGCATGTCAAagttatttttttttctctctctctcgaagtGTCCAGGGTTGTCAATGATGGATGGAACTCAATATTAAAAGTAGTTGCATTTTATATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730570 lncRNA upstream 31459 6169301 ~ 6169926 (+) True G1512506
TU1730568 lncRNA upstream 33367 6167778 ~ 6168018 (+) True G1512504
TU1730567 lncRNA upstream 34550 6165522 ~ 6166835 (+) True G1512503
TU1730566 lncRNA upstream 37010 6164105 ~ 6164375 (+) True G1512502
TU1730562 lncRNA upstream 38502 6162286 ~ 6162883 (+) True G1512498
TU1730591 lncRNA downstream 37204 6240452 ~ 6241742 (+) False G1512526
TU1730592 lncRNA downstream 38124 6241372 ~ 6241742 (+) True G1512526
TU1730607 lncRNA downstream 74334 6277582 ~ 6279381 (+) True G1512540
TU1730588 lncRNA downstream 93063 6296311 ~ 6296678 (+) True G1512523
TU1730601 lncRNA downstream 119630 6322878 ~ 6325377 (+) True G1512534
XM_036951108.1 mRNA upstream 12459 6172823 ~ 6188926 (+) False LOC110518779
XM_036951131.1 mRNA upstream 43409 6146666 ~ 6157976 (+) False LOC118941019
XM_036951132.1 mRNA upstream 43409 6146666 ~ 6157976 (+) False LOC118941019
XM_036951130.1 mRNA upstream 43409 6146667 ~ 6157976 (+) False LOC118941019
XM_036951291.1 mRNA upstream 104784 6082293 ~ 6096601 (+) True LOC110527156
XM_036951484.1 mRNA downstream 115653 6318901 ~ 6351781 (+) False ubac2
XM_036951485.1 mRNA downstream 115655 6318903 ~ 6351781 (+) True ubac2
XM_036951482.1 mRNA downstream 148668 6351916 ~ 6372317 (+) False LOC110512784
XR_005037352.1 mRNA downstream 148668 6351916 ~ 6374144 (+) False LOC110512784
XM_036951481.1 mRNA downstream 148670 6351918 ~ 6374144 (+) False LOC110512784
TU1730480 other upstream 22274 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 530052 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 588349 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 957958 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 1095297 5104087 ~ 5106088 (+) True G1512182
TU1731419 other downstream 195515 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 198825 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 237604 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 347397 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 505411 6708659 ~ 6710048 (+) True LOC110516612

Expression Profile