RNA id: XM_036951484.1


Basic Information

Item Value
RNA id XM_036951484.1
length 2591
RNA type mRNA
GC content 0.47
exon number 9
gene id ubac2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6318901 ~ 6351781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATCTCGAACAATTTTGGACGAACTCGACCACCGTACTCGATACCCTTTCCCCTCTATCTCACTatggtgtttttttttctttctaactTTTAGTTACTATAGCTAAGTTTGTACCTTCATTTTGCAGTGCCTTTACACAGACagtcattatatatatatttttcgtTTTCCATCATGTTCACGACCACCGGTTCCCGAGGGCTCGATAAGGCCCCCCTGTCTAAAGGTCTCCTCCTGGTCCTCAGTGGTCTGACTGTCGTGCTAAACCTCCTGCCACAGTACAATCACCTGTTCACCTACAGCCTGCAGGCCATCACGCTGCAGCACCAGGTATGGCGGTTAGTGTGTGGCAGACTGATCTGTCTGGACCTAAAGGACACCTTCTGCAACAGTCTGCTCATCTACAACTTCCGCATCTTGGAGAGACGGTTCGGCAGCAGAAAATTTGCTTCCTTCCTGTTTGGGACGTGGGTGCTCACTGCACTGGTGGACTTCCTGCTGTCCGAAGCGTTTCACTACCTGTTTGACTACCAGGTGTCTGAGCTGCCTGCCGGACTgcTAGGCCCATTGTTCAGCCTGTTTGTACCTTTCTACTCCTCCATCCCCAAGGTTCCAGTCACTCAACTCCTTGGTCAGATCTCCATAACTAACAAGTCCCTGGTTTACATTGTAGGCCTGCAGCTCCTGACCTCCAGTCCGTTCATGTGGCTCGTTGCTCTCAGTGGACTGGTCTCTGGGAAGCTGTACCACGGAAATGCTCTGGGGGTGCAGCGGCTGCTCTTCGTGCCCCGGTGGCTGTCCCGTGTAGGGGCCTTCGTCCTGGAGCCCCTGTTCTCTGGGCCCCCGCCCCCCAATGAACCCCCCCTGGGTATGGGGGCTACTCTGGACATCCAGAGACAGCAGAGGATGGATCTGCATGATCAACAGATGCTGCTGGCCCAGTTCCATCAGGCCAGGAGGAACCACAGACCACCACAGaATGGCCTAATGAACTGGAACAGATTTTTCCCATCGCTGAGACACAGAGGACAGAACCTTCCCCCAGAGCTGCAGCCACACCCCTCTCCACAGCAGCTCCACCCCACAGCTCCACCACTGCTGGAGCCCACAGCTCCTCCACTGCTGGAGCCCACAGCTCCTCCCTTGGTCAACACTCCTGTAGCTGAAGAACAGGTGAGCACTGTTGCCAGATTGATGGAGATGGGCTTCTCCAGAATAGATGCTCAGGATGCCCTCAGAGCATCCAACAACGACATCAACGTGGCAACCAACTTTCTACTGCAGCATTTAGGGTAGGGAGGAGTTTGAAAGATGTAGAACCtgagagagaaaaacaacagAATGAAGTGTGGGTCTGATCCAGTGAGCAGGGTCCTGGGGGTTTGAGGCCAGGGTGACCGGCCTGCTCTGGAGCTCCAGAGGACTACACAGAGAATAACTCAACACAGACTACACAATTActatgaggaaaggagaggaggaggacagtaaTGCTGCTGCTGTCCACCGTGCTTCCTGAAGGGTGAAGAGGGCTGTCCACAGTGCTTCCTGGTAGTGGGTGCTCAGCCCTGTTCCAGATAGTTTGGATACTCTGTCCTGTCACCTTGCTGCTGAGGGACAGAGGAGGATCAGAAGGCTGCTATTCTCAGGGCTTGTTGCATCTAGTGTCTTCTCTATACTCTAGCATTACCGTGGTTCATTACGGCTTcctccacctcacacacaccttcgcccagaaaacacacacattcgCCAGTCCCTAAAGGTTTTCTTTTGTGTCATTTGTCCATGGACCGTGATTACAGGAGTTTGTTTGCTTGACTTCTGCAGAATTAATGTACAATTCCTCAGAATTAATCTAAAATCTTAAAGGGGTTTGAAATGAGGAGAATATACTAAATTATGGAAACTGTCAATCTTGTATACTCAATGAAAAACGTCTGCACATGTACTACTTAGTGGATGGCTTGTATGTTTAGCTGCTCAGTGGCTACATTCTGGTTAACTACACTATGGAATAAAATCATGATGACAAGATATTAATTATTTAAACTGTTTCACTAGTTTTTCACAAAATCATTGAGGATTTAACACTTAtttatataattttttatttactttttgttTTATGTGACTGACTGTATAAACGGGGGTGTGCTTGTTGTTCGGTTAACCTATGCCTGTGTGTGGTGTCATTATGCTACAGATTACAAATGATTAACAATTTAACAAACTGCTTCCAACCACTGAAATATATATGCAATGTGCTCTGCTGTGGTAACCGTGCTGCCCATACATCGTTACAACAGTATAATGGCCTAATGAATAAACCTACCTCTCACCTTCAGATGATTTTCTGCTTTAATTCACAGCATTACTCGTGTTTATTATGCTTTGGGATGACTGTGACAAACATGGCGAATAATAGTTCCCGTTTTGAGAGAAATATTAGTTTTACACTGCCATCTCCAGGTCGTTGTTGGAATAGGCACTTTCTGCCAGAGACGAAATTGTAAGGTGCTCTGAATGTTGCTGTTTGATTCTCAGCGGAATTAGAAATCATGACAATAAACCCGTTTTTAattcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730588 lncRNA upstream 22223 6296311 ~ 6296678 (+) True G1512523
TU1730607 lncRNA upstream 39520 6277582 ~ 6279381 (+) True G1512540
TU1730591 lncRNA upstream 77159 6240452 ~ 6241742 (+) False G1512526
TU1730592 lncRNA upstream 77159 6241372 ~ 6241742 (+) True G1512526
TU1730579 lncRNA upstream 115729 6201414 ~ 6203172 (+) False mzt1
TU1731399 lncRNA downstream 25949 6377730 ~ 6377948 (+) True G1513174
TU1731406 lncRNA downstream 38259 6390040 ~ 6390317 (+) True G1513181
TU1731408 lncRNA downstream 41918 6393699 ~ 6394103 (+) True G1513183
TU1731420 lncRNA downstream 51464 6403245 ~ 6403470 (+) False LOC110495361
TU1731421 lncRNA downstream 51464 6403245 ~ 6403517 (+) True LOC110495361
XM_021560766.2 mRNA upstream 115653 6201385 ~ 6203248 (+) False mzt1
XM_036951108.1 mRNA upstream 129975 6172823 ~ 6188926 (+) False LOC110518779
XM_036951131.1 mRNA upstream 160925 6146666 ~ 6157976 (+) False LOC118941019
XM_036951132.1 mRNA upstream 160925 6146666 ~ 6157976 (+) False LOC118941019
XM_036951130.1 mRNA upstream 160925 6146667 ~ 6157976 (+) False LOC118941019
XM_036951482.1 mRNA downstream 135 6351916 ~ 6372317 (+) False LOC110512784
XR_005037352.1 mRNA downstream 135 6351916 ~ 6374144 (+) False LOC110512784
XM_036951481.1 mRNA downstream 137 6351918 ~ 6374144 (+) False LOC110512784
XR_005037351.1 mRNA downstream 137 6351918 ~ 6384414 (+) True LOC110512784
XM_036951486.1 mRNA downstream 48367 6400148 ~ 6403517 (+) False LOC110495361
TU1730480 other upstream 139790 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 647568 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 705865 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 1075474 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 1212813 5104087 ~ 5106088 (+) True G1512182
TU1731419 other downstream 46982 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 50292 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 89071 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 198864 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 356878 6708659 ~ 6710048 (+) True LOC110516612

Expression Profile