RNA id: XM_036951482.1


Basic Information

Item Value
RNA id XM_036951482.1
length 2122
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110512784
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6351916 ~ 6384414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGTCCGCTGCAGGAAAAGTCTCTGGGTTATGTAGCTACGGAGGGCAGACATATcccagctagttaacgttagctaccttATGTCAACTGTCCTATCTGGTGAATTCAAATGCCAGCTAGCCTGTCACCCCCTGTGTAGACAGATATTAACGTTACGCCAAGAAACGTTTAGCTAACTAGGTTCGTCGAGAGAAGAGGAAAATGTGCTCCCTGCACAGAGCGAGAGGCTCTGTTTTGGTGATCTTCCTTCTGCTACACAGCGCTACAAGTTTCTATCTACCGGGTCTGGCCCCTGTTAGTTTTTGTGAACCAGGACAAACTGGGAAAGAGAATGAAGTACCGGACTGTAAGTCGACCATCGAGATATTTGTGAACAGACTGGATTCTGTGGAGTCTGTCTTACCCTATGAATACACTGCGTTTGATTTCTGCGCTATCGACTCCGAGAAGCGCCCGTCTGAGAATTTGGGTCAGGTTTTGTTTGGCGAGAGAATTGAGCCCTCTCCCTACAAGTTTGAGTTCAAGAAGAAGGTGGATTGTAAGCCGGTGTGTACTAAATCCTACAACACCAACAAGCCAGAGGACAAAGCCCACCTGGACTTTCTGAAGAAAGGCATGTTGCTCAACTACCAGCACCACTGgATAGTGGACAACATGCCGGTGACCTGGTGTTATGACGTGGAGGACGGACAGAAGTTCTGTAACCCAGGGTTTCCCATTGGCTGCTACGTCACTGAGGCGGGACGACCCAAAGACGCTTGTGTTGTCAACTCTGACTTTAAGGACAAAGACACATTCTACGTCTTCAACCATGTTGACATCACCATTCACTATCATGTGGTGGAGAACGAGGCTGCTGGGGCTAGACTGGTCGCTGCCAAGATGGAGCCCAAGAGCTATAAACACACCAAAGTGGAGGCCCCCGACTGTGCAGGAGGGCCCATGTACCTGAACAACAAGTTCAGTGGAGAGCTGAAGATCGGCTATACCTACTCTGTCCAGTTTGTGGAGGACACGCACATCAGATGGGCGTCACGTTGGGACTACATTCTGGAGTCCATGCCCCACACCAACATTCAGTGGTTCAGCATCATGAACTCTCTGGTGATCGTTCTCTTCCTGTCTGGTATGGTGGCTATGATCATGCTGAGGACTCTACATAAGGACATTGCCAGATACAACCAGATGGACTCTGTGgaaGATGCCCAGGAGGAGTTTGGCTGGAAGCTGGTCCATGGAGACGTCTTCCGGCCTCCCAGGAAAGGCatgctcctctctgtctttctgggATCTGGAACTCAGATCTTCATCATGATGTTCGTCACTCTCTTCTTTGCCTGCCTGGGCTTCCTGTCCCCGGCGAACCGCGGTGCCCTGATGACGTGTGCCGTGGTGCTCTGGGTCCTACTGGGCACACCAGCCGGCTACGTGGCTGCCCGTTTCTACAAGTCCTTTGGTGGGGAGAAATGGAAGACTAACGTCCTGCTGACCTGCTTCCTGTGTCCTGGgGTTGTGTTTGCTGATTTCTTTGTGATGAATCTGATCCTGTGGGGTGAGGGCTCGTCTGCAGCCATGCCCTTTGGCACCCTGGTGGCCATCTTGGCTCTGTGGTTCTGCATCTCTGTCCCCCTCACCTTCATAGGGGCCTACTTCGGCTTCAAGAAGACTGGGATTGAGCACCCTGTGCGGACCAATCAGATCCCTCGTCAGATCCCGGAGCAGTCGTTCTACACCAGATCTCTCCCAGGGATCGTCATGGGGGGGATCCTCCCGTTCGGCTGTATCTTCATCCAGCTCTTCTTCATCCTCAACAGCATCTGGTCTCACCAGATGTACTACATGTTTGGTTTCCTGTTTCTGGTGTTCATAATCCTGGTAATCACCTGCTCTGAGGCCACCATCCTACTCTGCTACTTCCACCTCTGTGCTGAGgacTACCACTGGCAGTGGTGTTCCTTCCTGACCAGTGGTCTTGTCTTAGTAACGATGTTATAAACACAGAGATATctaactgttctctctgtctctctccatcaggaCTACCACTGGCAGTGGTGTTCCTTCCTGACCAGTGGTCTTGTCTTAGTAACGATGTTATAAACACAGAGATATctaactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730603 lncRNA upstream 5735 6345722 ~ 6346181 (+) True G1512536
TU1730616 lncRNA upstream 18977 6330474 ~ 6332939 (+) False G1512548
TU1730617 lncRNA upstream 18977 6332470 ~ 6332939 (+) True G1512548
TU1730601 lncRNA upstream 26539 6322878 ~ 6325377 (+) True G1512534
TU1730588 lncRNA upstream 55238 6296311 ~ 6296678 (+) True G1512523
TU1731399 lncRNA downstream 5413 6377730 ~ 6377948 (+) True G1513174
TU1731406 lncRNA downstream 17723 6390040 ~ 6390317 (+) True G1513181
TU1731408 lncRNA downstream 21382 6393699 ~ 6394103 (+) True G1513183
TU1731420 lncRNA downstream 30928 6403245 ~ 6403470 (+) False LOC110495361
TU1731421 lncRNA downstream 30928 6403245 ~ 6403517 (+) True LOC110495361
XM_036951484.1 mRNA upstream 135 6318901 ~ 6351781 (+) False ubac2
XM_036951485.1 mRNA upstream 135 6318903 ~ 6351781 (+) True ubac2
XM_021560766.2 mRNA upstream 148668 6201385 ~ 6203248 (+) False mzt1
XM_036951108.1 mRNA upstream 162990 6172823 ~ 6188926 (+) False LOC110518779
XM_036951131.1 mRNA upstream 193940 6146666 ~ 6157976 (+) False LOC118941019
XM_036951486.1 mRNA downstream 27831 6400148 ~ 6403517 (+) False LOC110495361
XM_036951488.1 mRNA downstream 32116 6404433 ~ 6459798 (+) False LOC110496964
XR_005037353.1 mRNA downstream 32116 6404433 ~ 6459931 (+) False LOC110496964
XM_036951553.1 mRNA downstream 117914 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA downstream 118273 6490590 ~ 6491752 (+) True LOC118941080
TU1730480 other upstream 172805 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 680583 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 738880 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 1108489 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 1245828 5104087 ~ 5106088 (+) True G1512182
TU1731419 other downstream 26446 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 29756 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 68535 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 178328 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 336342 6708659 ~ 6710048 (+) True LOC110516612

Expression Profile