RNA id: TCONS_00047707


Basic Information

Item Value
RNA id TCONS_00047707
length 624
RNA type nonsense_mediated_decay
GC content 0.46
exon number 3
gene id XLOC_024042
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19485198 ~ 19521245 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATCTTCATCTCCACATGCAGCACAAACACACCATCTGGATTCCCTAAAACTCCCAGTCGACAGTGAAGAACGGCTTTATCATGGAGAACAGCTTAAACCAAGAAGCAGAGGAAAATCCCTACCTGTGTTTTCAGAGAACACCATCTCTCAGACGTAAATGGAGAAAGCGCTATGGAGGCCTGGATGGAAACAAACTGCTGGAGCCGAATAAAGAGGACGACACAAGAGgtacaaaaataaatactgtacaattTGGTGATTTCCACTCACGGTGACCCTGGTTTTGGCATCACAGTAGCTCTGGGAACgtgtttgcattttgtttggatcATGGATCCTCTCCGCCTCACATTCCACATGTCACCACCACTGATCAGACACCAGTTCTGTAGGAAATCTGTGAGACTAGGGCTAAATGAATGGGACAGTTCGGTAGACGCTCTCATTTAACTGGGCTTGTGGTCAACATCTGGGCTGTAAAAAATGTGCAGAGGCAGTGGGTGTGTTCTGGAGAGAAGTGATGTGGCATGTGTTGGGTCTACCGTGGCTGAAAAGTACACTCCAAATTCTAAGAACTGTCATccttagctcgagtgaccatgcaaaaaaaatcaatttCTGT

Function

GO:

id name namespace
GO:0006537 glutamate biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0006543 glutamine catabolic process biological_process
GO:0004359 glutaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-106 Predicted to enable glutaminase activity. Predicted to be involved in glutamate biosynthetic process and glutamine catabolic process. Predicted to act upstream of or within glutamine metabolic process. Is expressed in brain; pectoral fin; and swim bladder.

Ensembl:

ensembl_id ENSDART00000156074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049225 lncRNA upstream 44038 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 127463 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049222 lncRNA upstream 565159 18920543 ~ 18924391 (+) False XLOC_024031
TCONS_00049223 lncRNA upstream 565159 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047686 lncRNA upstream 565159 18921825 ~ 18924391 (+) True XLOC_024031
TCONS_00047713 lncRNA downstream 59706 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00047728 lncRNA downstream 241540 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047734 lncRNA downstream 378252 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00049226 lncRNA downstream 494448 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 494459 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00047703 mRNA upstream 142473 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047702 mRNA upstream 142473 19238175 ~ 19347077 (+) False XLOC_024039
TCONS_00047704 mRNA upstream 142543 19238180 ~ 19347007 (+) True XLOC_024039
TCONS_00047701 mRNA upstream 283675 19201231 ~ 19205875 (+) True XLOC_024038
TCONS_00047698 mRNA upstream 297247 19149241 ~ 19192303 (+) False XLOC_024036
TCONS_00047708 mRNA downstream 30334 19522954 ~ 19536331 (+) False XLOC_024043
TCONS_00047709 mRNA downstream 30479 19523099 ~ 19537323 (+) False XLOC_024043
TCONS_00047710 mRNA downstream 37397 19530017 ~ 19535811 (+) True XLOC_024043
TCONS_00047711 mRNA downstream 48399 19541019 ~ 19556986 (+) False XLOC_024044
TCONS_00047712 mRNA downstream 48401 19541021 ~ 19556971 (+) False XLOC_024044
TCONS_00047695 other upstream 377742 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1000544 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1391689 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1610918 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047656 other upstream 1880819 17605479 ~ 17608731 (+) True XLOC_024009
TCONS_00047732 other downstream 281939 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 1099863 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 1111276 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2733182 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 3094676 22587296 ~ 22594781 (+) False XLOC_024094

Expression Profile

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