RNA id: XM_036951492.1


Basic Information

Item Value
RNA id XM_036951492.1
length 4214
RNA type mRNA
GC content 0.54
exon number 41
gene id LOC110514219
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6493403 ~ 6573608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGACACACCATTCTTCCGGTACAACAAGGAAGAGTGGAATCGGAGAGATGTGATACCGCTAACTTGCTAATAATGTAGCTATTGTTTCGTCGTGTATCTATCTATATTAATATATTTGGCCTCTTACAATGTCAGAATCACCAGATACACGCAGTTTGGTTTCTGCGTCATCCCAGCTCAATTTAATGGAAATAGATACGATCGACGATAAAGAGTTTGACATTCCCCAAGTTGACACCCCGCCTACATTGGAGAGCATCCTGAATGAGcctgaggatgaggaggagcccTTCATCCTGGAGGACACGTGTCTGCTGAACACAGAGAACATCGACGCCCACTCCTGTGAGACCTCCTCACTGGCCAGCTCCGACAGCGGTGACCGCACACACCTCAAAcggaagaGGAAGACAGTGGAGCTCAGCACTACAGTCCATGGCTCTGTGCTCCGACACAGCATCCTGAAAGGCATCTCTGCTCAGATAGTCTCAGCCgctGACAAAGTAGATGCTGGACTGCCAACTGCAGTAACTGTGTCTGGTGTGATCGTAGTGGGAACGTCTCATGGCCTGGCTCTAGTGTTTGATCTGAACCAGGCTCTCCGTTTGTGCTTGGGAAGCACGGCGACAGGGGCGGAGTACGGAGCCGTCTCCGCCCTCAGCATCAACCATGACTGCACCCGCCTGCTCTGTGGCTTCGCCAAGGGACATATCACCATGTGGGATCTGGCCAATGGGAAGCTTCTGCGAACCATTACCGACGCCCACCCACCCGGCACCGCCATCTTACATGTCAAGttcaCCGATGACCCTACGCTGGCAGTGTGCAACGACAGCGGTGGCTCTGTGTTTGAGCTGGCTTTCAGgagGTTGATGGGGATGCGTACATGTGAGTCTCGTTGTCTGTTCAGTGGCTCTAAGGGAGAGGTGTGTAATGTGGAGCCTCTCCTTACCGCCCCGGACCTGAAGGATCACCCCATCACACAGTACTCTCTCCTGGCCATGGCCTCTCTTACTAAGATTCTAGTGATCGGACTGAAGCCTTCTCTCAAAGTGTGGATGACATTTCCCTATGGCAAGACGGACCCGACCAGTGTTCCCCAGCTGGCCTGGCAGTTTGTCCCCGTTCAGAAGGTGGTCAACCCCGTCCTGGCATTCTGCAGAGGAGACACCGTACACTTCCTGCTGGTGAAGAAGGATGAGACCGGAACCATCCATGTCATCAAGCAAAGACAGCTGCAGCTGAactgtgacatcatcagtctGAATtGGATCAACAGTCGTACCCTAGTGGTGATGGACAGCGGGGAGAAGCTGCGTGTGGTGGACCGACCCAGCCAGGAGGAGCTGGAGAGCTTGGACGTGGCTGAGGTGCAGCTGGTCTACAACAGCAGCCATTTTAAATCGCTGGCAACGGGGGGAAACGTCAGCCAGGCACTGGCCCTAGTAGGAGAGAAGGCCTGCTATCAGTCTGTCTGCAGCTACACAGGACAGATGGTGTTACTGGGGACCAAgTCAGCCCACATCCTGACTCTGAGGAACTGGAGGGAGcgggtggactgtctgttgaaacaggaACGTTTTGTTGAAGCTCTGTCCTTGGCCTGGTCCTTCCATGAGGGCACCGCCAAGGCTGTACTGGGGCTGTTTGGGGACCCAGCGAAGAGGAAAGGTGTAGTGGCAGACAAGATGATTGAGATTCTGTTCCAGTATGTGGAGCGCTCAGTGAAGAAATGTCCAGAACACGGCAAGATACAGATCATGGAACAACAtttccagGACATGGTGCCTGTCATGGTAGATTACTGTCTGCAGCTGCAGAGgacGGACCTACTGTTTAACCAGCTGTATACCCGCCTGGTGGAGAACTGTGTGGCTCGGGGGGTCTTCCTGGAGAGTTTGGAACCCTACATCGTGTCGGAGCGTCTGGGCTGTGTGACCGCTCCCGTCATGAGAGACCTGCTGACCCACCTACAGGATAACAACATGATGGACAGTGTAGAGAACTGTCTGATACATCTGGACATCACCAGCCTCGACATACAACAGGTGGTCCAGATGTGTTGGGACAACCAGCTGTATGATGCCATGATCTACGTGTTCAACAGGGGAATGAATGACTACATCACCCCTAtggagAAACTCTTCCAGGTCATTGGCCCCCCGCTGAGAGAAGGCAGGGCCCTCACAGATGAACAGGTGGTGATGGGTAACAAGCTGCTCGTTTATATCAGCTGCTCTCTGGCAGGCCGGGCCTATCCACTAGGAGACATCCCAGAGGACCTGGTGTCTCAAGTCAAGAACCAGGTGTTTGAGTTCCTGATCAGGCTCCACTCTGCGGAGGCGGGTCAGGAGGAGGAGTTGTACCCTTACATCAGAACCCTGGTCCACTTCGACACACCAGAGTTCCTCAACGTTCTGGCCCTGACGTTGGAGGACTTTAAGAATGACAAGCAGGCTCTGGAATACCAGCAGAGGATTGTAGACATTTTACTGAAGgTGATGGTGGAGAACAGTGACTTCACTCCCTCTCAGGTGGGCTGTCTGTTTACCTTCCTGGCCCGCCAACTGGCCAAACCTGACAACACACTCTTCGTCAACAGGAAGCTCTTCGATCAGGTTCTGGAGTTCCTGTGTAGTCCAGACGACGacaccagacacacagagagacaacagGTGCTGTTGGAACTGCTGCAGGTGGGAGGTGTGATACAGTTTGATGAGGGACGACTACTGGGATTGGCTGAGAAGGCAGAGTTcTACCAGATCTGTGAGTTTCTGTATGAACAGAATCATCTGTATGATAAGATTCTGGACTGCTACCTCAGAGACCCTCTGAGAAAGGAAGAGATCTTTAACTACATCCACAACCTGCTGTCCATGCCTGGCTACAGCTCAGAGGAGAAACACTGTGTCTGGGAGAAGGCCCTGCTGCACATTGCGGAGCTGGTGACCCTTGACCCTGCCAAGTCAGCTGACCTGGTGGCCATGCATTTCCCTGAGGAAGTACGACCCATCATCACCAGACTACAGgATGATCACCTAGTGTTCCAGTTCCTGAGGTGTCTTTTGGACCAGAGTGCTACCTCCAGGGAAGGCCCTCATCCCCAGCCTCTCCTAAGACTGAGCCCCGACCTGCATGAGCTCCACATCGGCCTGCTGTGTCGCTTCACTCCCCGACAGCTCACTGACTTCCTCAAGGCCTCTCAGGACTACAGGCTAGAGGAGGCCGTCCAGATAACAGAACAGTACCAGGTCCATGAAGCTACATCCTATCTGTTGGAAAAGAAAGGTGATTCTCATGGAGCCTTCCAGGTCCTGCTGAAGacgctGAAGGACAAACTCGGCGCTGTCACCTCAGAGAAAAGgagtgaagaggagggggagaccgggagggaggaagagagtccaCTGCAGAGAGTGGAGGGGTCATTGGGTGACATCATCGCTCTGTGTCACAGGAGCTCCCAGAGTCTCAACCAAGAACAGAGAGGGGTGCTGTGGTTCCCTCTGCTAGAAGCTATGATGTCGCCACAGAAGCTGCTCAAGGGACCGGACACACGCACTACATCAgaggTATTGAAGGAGCTCACCATGAAGGTCCTGAACAGTATGAGTAGCTTCATCCCCCTGCCTGCTATCATCCAGCGCATTCTACAGgaccctGTGTATGGTAAAGGAAAGTTGGCTGAGATACAAGGCCTTATTCTGGGTATGCTGGAGACCTTCAACTATGAAcagacGTTACTGGAGACGACCACCAGTCTGTTGAACCATGACCTCCACTGGTCCCTGTCTCACCTGCGAGCGGCGGTCAGCAGGGGGCTCCACCCCCGTCAGGACCACTGTAACATCTGCCTGCAGCAGTACAGGAGACGTCAGGACAGCCCAGATGACATCATCATATTCAGctgcggCCACCTGTACCACTGCCAGTGTCTGCAGAGGAAGGGGAGTGGCCACGCGGAGCCCAGGTTGCTGCAGGTCTGGAGCTGCTACAAGTGTATCTcctcacagagagggaggggcggGGACAGGGTCACCACGGAGACCGGGAGGGGGCGAAGCACCTCCCTCGCACAGACCAACGTGATGTCCAGGGAAGCAGGGGAAGATGGGAAAAAGGTAAGGACTGTTGTGGGTAACCTCTCATAGGTAGCATCCAGACAGCCCATCTGTCTgtcttacactctctctctctctctctctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731516 lncRNA upstream 682 6492291 ~ 6492721 (+) True G1513253
TU1731441 lncRNA upstream 24971 6468161 ~ 6468432 (+) True G1513199
TU1731443 lncRNA upstream 25314 6467789 ~ 6468089 (+) True G1513201
TU1731462 lncRNA upstream 26823 6466279 ~ 6466580 (+) True G1513218
TU1731439 lncRNA upstream 28431 6464282 ~ 6464972 (+) True G1513197
TU1731620 lncRNA downstream 137294 6710902 ~ 6712100 (+) False G1513329
TU1731621 lncRNA downstream 137294 6710902 ~ 6712100 (+) False G1513329
TU1731622 lncRNA downstream 137294 6710902 ~ 6711635 (+) False G1513329
TU1731623 lncRNA downstream 137294 6710902 ~ 6712240 (+) True G1513329
TU1731624 lncRNA downstream 138772 6712380 ~ 6712819 (+) True G1513330
XM_036951553.1 mRNA upstream 1651 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA upstream 1651 6490590 ~ 6491752 (+) True LOC118941080
XR_005037353.1 mRNA upstream 33472 6404433 ~ 6459931 (+) False LOC110496964
XM_036951488.1 mRNA upstream 33605 6404433 ~ 6459798 (+) False LOC110496964
XM_036951486.1 mRNA upstream 89886 6400148 ~ 6403517 (+) False LOC110495361
XM_036951555.1 mRNA downstream 132024 6705632 ~ 6710286 (+) False LOC110516612
XM_036951031.1 mRNA downstream 233671 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 234317 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 241878 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 241878 6815486 ~ 6837266 (+) False LOC110495421
TU1731437 other upstream 33834 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 90489 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 90489 6402073 ~ 6402914 (+) False LOC110495361
TU1730480 other upstream 314292 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 822070 5663968 ~ 5671333 (+) True LOC110513970
TU1731618 other downstream 135051 6708659 ~ 6710048 (+) True LOC110516612
TU1731792 other downstream 452600 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 459002 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 515224 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 852975 7426583 ~ 7426971 (+) True G1513874

Expression Profile