RNA id: XM_036951516.1


Basic Information

Item Value
RNA id XM_036951516.1
length 2704
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110495417
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6843359 ~ 6850547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTAAAAATTAATGCGTTCGCTGAACATTTTCGAAGAGAAATGTAAAAGTTTATGGCAACAGTACAACGAAACGATTCATACGGTGCAAGTCATTTTCGTTTGAAACAATTTTGACAAACATTTCAAACGAAGAGGGACATTTTCAACTTTGACCCCTGACGAATTGAATGAGTTTTCTGCAAAATGGCAGCATCAATACCTTCTGCAGTGTCAGCACCCTCATTGGGTCAAAAACGCAGGGCATCTttgaagaagaaagaaagaagaaaacgAAAACGCCAAGCCCTCGCCAAAGCCCAAATCAGAGAATCTGGTGAAAATGGAGATGATTCTCCACCAGAACAAGATGACGATGAAGAGGAAAGGAAGGCTGAGGAAGAAAGacGGCGCCTAGACCAGGAGTGgctggagagggagaggctggCCCAGCAGGAATTCAGACTCCGGTGGGAGAGGGAAGACGCTGCaaggaagagacaggaggaagaggagGCGAGGATAAAGCAGGAATGGGAGGcccagcagaggagagaggaagaggagaaggagcagaagcaacaggagaagagagacagagagGAAGCTGTACAGAAAATGTTGGACCAGGCTGAGAGTCAGCTGGAGAATGGGGGTCCCTGGAGAAACCCGGAGGCTCCAGATTTTGGTACGGAGCAAGACCGGGCTAACTGCCCTTTCTTCCTCAAAACTGGAGCCTGCCGCTTCGGCGACAGGTGCTCTCGTAAGCATGTCCACCCCCCGTCCAGCCCTACTCTGATGATCCGGGGGATGTTTGCGACTTTCGGGATGGACCAGAGGTCACGGGACGACTACGATACAGACGCCTGTCTGGAGCACAGCGAGGAGGAGGTACAACAGCAGTTTGTGGATTTCTACGAGGATGTACTTCCTGAGTTCAGGACTGCTGGCAAGGTGGTGCAGTTTAAGGTCAGCTGCAACTTTGAGCCACATTTGAGAGGAAATGTTTATGTCCAGTTTGACACAGAGGAGCAGTGCAGAGAGGCCTTCGTGATGTTCAATGGAAGATGGTACGCTGGTAAACAGCTCCAGTGTGAGTTCTCTCCTGTCACCAGATGGAAGACTGCTATATGTGGTTTGTTCGACCGACAGAAGTGTCCGAAAGGAAAGCACTGCAACTTCCTGCACGTGTACCGTAACCCTGGAAACGAGTTCTGGGAGGCGGACAGGGACCTGCACATGTCCCCCGACCGGGGAGGAGGGGGTAACGGGTCTTTCGCTGGGGGCCGGTTCTCTGAGAGGAGTAACCGCTCCTCGTGGACCGAGAGGTCACAGAGCCGACggggggagaggagcaggaggagtagGAGCAGGGAGAGCAGAATAGCCCAAAGGAGAGAGAGTCTTCAGAGTGACAGGTCTTGGACCAGTCGTACCAGCACAAGACTCAGGTCGAGGAGtagggacagagaaaggagagacaggAGGGACAGAGACCGGCGGGATGGGAGCAGAGACCGAgatgggagcaagagagaggggtggaggggttcaCCCACAGAGGCTAGTAGGGGGAGATCCAGATCAGCCAGCCCTGGAGAGTTCTctaagaggaagagacaggggagcAGGAGCCCTGGAGAGTCCTctaagaggaagagacaggggagcAGGAGCCCTGGAGAGTCCTctaagaggaagagacaggggagcAGGAGCCCTGGAGAGTCCTctaagaggaagagacaggggagcAGGAGCCCTGGAGAGTCCTCTAAGAGGAAGAGACGGGGGAGCAGGAGCCCTGGGAAAACATCCCAAAAAGACAAGCAGCCAGCCAACGACAGCAGCGACACAGCTCCATCACGCCACAAACACTCCAAAAAAAGCAAAAAGAAGAAGAGCAAGAGGAGGAAACCCAAGAGGGACAAAAAGAGCCAGTCGGCTGGGGGTCAGAGTTCATCTGCAGAGTCGGGGAAGGAGTCTTGGGACGAGGAGAAACCCTCTCCAAACCTTGTAGACAGCAGTACACGGACTCCTCATGAGGTAGACAACACTACCCAGGAGACTGTGGATGTAGACAGCAGTACACGGACTCCTCATGAGGTAGACAACACTACCCAGGGGACTGTGGATGTAGACAACACTACCCAGGGGACTGTGGATGTAGACAACACTACCCAGGGGACTGTGGATGTAGACAACACTTCCCAGGAGACTGCTAGGGTAAATGCCATACTTAGTCTCATGTTGTCTGAGTCTCTTGATAATGCCAATGCAGTCACTTCAGACATACAGACCCAGGTCAAGGAGGAGCCTGAGGATCCCTGTCCACCTATTGTCCCCTCTCCTAGCCCTGGGGATGTGGACATCGCTCAGACTCCTGGGGCCACTGACAACAGTACTCCTGAGGCAAACGCACTCTCCCCAGACCTCCATAGTATCTTCCTCAAGCAGGAGTATCCCTCTCTACCCAGTGTGCCTGAAGAGGAATGtgaacaggatggacctgagacGCTGCCTGATTCCCCCGACGATGATGAACCATAGCGGAATTAAATGTGTTCTGTATGGACTTCACCATGACTGCTATGGCCATTTTGAAGCGTACACTGTTTATGCATGGACTGTTTTCAATCTTCACCAATGCACTGCTCGACCTAGCTTTCACAAATGTTAGTTTGTTCCAAATGTAAGATGTGACAATTAAATGTTTTTATACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731716 lncRNA upstream 11792 6830664 ~ 6831567 (+) False G1513396
TU1731717 lncRNA upstream 11792 6830664 ~ 6831567 (+) False G1513396
TU1731718 lncRNA upstream 11792 6830664 ~ 6831567 (+) True G1513396
TU1731713 lncRNA upstream 17863 6825154 ~ 6825496 (+) True G1513394
TU1731706 lncRNA upstream 41122 6801994 ~ 6802237 (+) True G1513387
TU1731722 lncRNA downstream 5709 6856256 ~ 6856879 (+) True G1513399
TU1731727 lncRNA downstream 61766 6912313 ~ 6912941 (+) True G1513404
TU1731730 lncRNA downstream 69490 6920037 ~ 6920260 (+) True G1513407
TU1731731 lncRNA downstream 71753 6922300 ~ 6923956 (+) True G1513408
TU1731732 lncRNA downstream 76293 6926840 ~ 6927169 (+) True G1513409
XM_036951536.1 mRNA upstream 6093 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA upstream 6093 6815486 ~ 6837266 (+) False LOC110495421
XM_036951539.1 mRNA upstream 6093 6815732 ~ 6837266 (+) False LOC110495421
XM_036951538.1 mRNA upstream 6093 6816117 ~ 6837266 (+) True LOC110495421
NM_001160536.2 mRNA upstream 27952 6807925 ~ 6815407 (+) True syap1
XM_036951498.1 mRNA downstream 12584 6863131 ~ 6895296 (+) False LOC110496992
XM_036951496.1 mRNA downstream 12584 6863131 ~ 6907469 (+) False LOC110496992
XM_036951497.1 mRNA downstream 12584 6863131 ~ 6907469 (+) True LOC110496992
XM_036951549.1 mRNA downstream 96765 6947312 ~ 6958804 (+) False LOC118941079
XM_036951550.1 mRNA downstream 98038 6948585 ~ 6958804 (+) True LOC118941079
TU1731618 other upstream 133311 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 272880 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 383790 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 440445 6398763 ~ 6402914 (+) False LOC110495361
TU1731792 other downstream 175661 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 182063 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 238285 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 576036 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 769749 7620296 ~ 7621941 (+) True G1513922

Expression Profile