RNA id: XM_036951526.1


Basic Information

Item Value
RNA id XM_036951526.1
length 3318
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110513752
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7032578 ~ 7102239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCTGTTGGACATGCGCGTGGTGTAGAACACGGAATATGGCGGCCTGCATCTGATGGCAAATGAAGGATCTGACGCGAATACCTTCTCGAAACTGTAACCAGATCGGAACTACAACTACGTTACTAAGTCTTTGGCCGTGCTGTGTTCTTACCGTGGAGCTCAGCACCGCGTCGGTAGTGGCACATTGACCAGTCTGTGGTCTCCTCACCTGGCACCTGGTGGTACCATCGGTCACAATGGGCCGAACACCTCAGAAAGAGccaaaagaagagaggagggagaaacctGAGAGAAGTAACCCCTCTCCGGGAACCGGTCCCCCCTCTCTGGATAAATCTAATGAACCCTTCAGTTGGGAGGAGTACCTTAAGGAAACGTCATCCACAGCCGCGTCTCCCAGCTGTTTCAGACAGTCCCGTTTCCCTCCCAGTAATGACTTCAAGGCTGGTATGAAGCTGGAAGCCCACGACCCTCGGAACAACACGTCCATCTGCATCGCCACGGTGATGGGTATGATGGGGACACGTCTGCGTCTCCGTCTGGACGGGAGTGACAACACCAACGATTTCTGGAGACTGGTGGACTCCTCAGACATCCAGCCTATAGGGAcctgtgagaggagaggagacatgttaCAGCCACCTCTGGGCTTCAGAATGAACGCCTCCTCGTGGCCTATGTTCCTCCTGAGAACCCTGACTGGAGCAGAGATGGCACCGGCCACAGCTTTTAAAAAGGAACCCTCCAAGCCCTCCCAGAACCTCTTTAAACCTGGGATGAAGCTAGAAGCAGTGGACAAGAAGAACCCCTACCTGATCTGCCCGGCAACCATCGGAGAGGTCAAAGGTGATGAGATCTTTGTGATGTTTGACGGCTGGAGAGGGGCCTTCGACTACTGGTGCCAGTTTGACTCCAGAGACATATTCCCTGTAGGATGGTGTTCTCTGACCAGGCACAGCATCCAGCCTCCTGGCAACTTCTTCACCCTCCCCAAGGCCCTCTTCCTcccagcctcctcctctccccccgccCCCTCCAGACGCTCCATGCAGTCCCCCTCCTCCTATCGCCTGCCCCATCCGCTGCCCCCTCTGCCCGTGCGGAAGGGGGTCCGGGGCCGGCGCCCCAAACTGCAGACCATCGCCCTGCTCAAGGCAGCGGCGGAGGCAGCAGCGGAGGCTGCTCTGAATGGTACGCCACAGGTCTCCGGCTCCCAGCTAGCACCCAGACCCCATAAGAAGAGGGGGCCCAAGCCTGGGAGCAAGAGGAAGCCACGTGTGCTGCCCTCCTCGGGGACAGGCTCTGTATATACTACTACAGCCTCTGAGACCAGACTGAACAACGTTCATGGACCGAAGGACAACAGCCCTGGAGTGGTCTCCACAGtgtgtgtgtacgtgaacAAGCACGGAGCCTGCGGTCCACACCTGGACAGGAAGCAGTTGCAGCAGCTGCCGGACCACTTTGGGCCAGGTCCGGTCAACACTGTCCTACAGCAGGCTGTTCAGGCATGTGTGGACTGTGCCTACCAACCAACCTTCCTCTTCAGCTTCCTACAGTCCCAGTCCGATGGAGGAGAGATCATCAGAGTGCGGTCTGATGGGGGGATCCACTATGTCAAGCTGCCACAGGCCTCCTCTGCCTCCTTTGTGCTCAGGTTCATGGAGACTCTGTGTCACCAGCTGCAGAGTGACAACCTGTTCTCCTCCCAACCCTTCAGCCCTGCATTCATGGCCTCCACTGGACACACAGCCTACGACAGGAGCACGTCAGTAAAAGAAGAGATGTCAGAGGCCTTGTCCATAGCCAGAGGCTCCGTAGGAAGGAGCAGGCGCTTccagatggacagagacagggactgtAACCTTTAcccttctcccctgtcctcctccaAACGGCTGCACAGCACAGAGGCACACCCCTCGGAAGAGCCCCTTCCTCGCAGTGAGAACGGTTTGACTGAGGACCCTATGgacacctccacctctccctccatgaCCCCTCGCCCCCTGACACAACGCACCACCTCAGAGTACCGTGGCCAGGGGTCCAGCAGCCCCTACTaccctgggtctgggtctggtcaccccccaccaccacccctcagGCGCCTGGCCCCCAACCCTTCCGACCTGGGGTCCAGAGGGCTACAGAGAAGAGTGGAAGGTAGGCCTTCTGCGAGCTCCACCACAGGTCCTGAGCACCTGGCAGCTGCAGACCGGGAGGCTGCAGCGGGGAACGGGGCCGGGAACGCCCCTTCCTCCTGGTCTGTGGATGAGGTGATGCAGTTTGTCCACGACGCCGACCCCCAAACACTCGGACCCCACGTGGAGCTCTTCAGAAAACACGAGATCGACGGAAAGGCGCTGATGCTTCTACGTAGTGACATCATCATGAAGTACATGGGTCTGAAACTAGGCCCCGCCCTCAAGCTATGTCACCACATCGAGAGGCTCAAACAGAccaaacagtaacacacacacacacacacacacacactagaatggGAAGATCATCTTTGCTGTGAAACCCTAAGCACAATGAGTCCTTAATCATTCCTTTGCAGAGACCTTCATACCTCATCCTGTGATGAAGAGCATTCAGAGAAACAGTATGAACGTCAGTGTGAACGTCAGTGTGAACGTCCGTACAGAGAAACACTATGAACGAACTTCAGTCTACTATTCTTTAGAATAGACTCAGCTGAATCCCAAAGGATGATGTTGAGTGTTTACCTACCTATGCATTGCCCATGTACACCTTCTCTCAACCCTTACCtacttagcctggtcccagaatgttctgtaaaaaacaaacagatctgagaccaggctactgTCAGCCGTGGAGACCTGGAGATGCAAGGAGCCATCTCCACACAACCCCCAATGGCATGTATTACTTGTTGCACTAGCCTCTCATTGCAATAAGATATCAACCATTCAGCTTCTATATGGAGACTGTGATTTGATTCTTCAATAGTTTTAATATCAAAGGATGTTGATAAGGAGAATGTACCATGCTGTTAAGATTCATTGTTTGTTTTGGACACCACATTTGACCGTACTCCTTAGTGCATTCAGGGTGTGACATCACACAATCTGGACTCGTTGGAACACTGATCGTTCTTTGGATCGCCCCAATGGAACTTCTAACCAGGATCTATGATTGCGATTGGACATTGCGTGTAGATTCTAGAATACGTTGGACAATGAAGACAGGAAGTTCCTGTTCAAGTCAACGTCTCATTGTAAAAGAAGATGGTGGACTTATGTTTGAAGAACCAGACAAAAAACCTGTGTTTTACATAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731776 lncRNA upstream 24029 7007310 ~ 7008549 (+) True G1513441
TU1731739 lncRNA upstream 90660 6939795 ~ 6941918 (+) True G1513413
TU1731732 lncRNA upstream 105409 6926840 ~ 6927169 (+) True G1513409
TU1731731 lncRNA upstream 108622 6922300 ~ 6923956 (+) True G1513408
TU1731730 lncRNA upstream 112318 6920037 ~ 6920260 (+) True G1513407
TU1731798 lncRNA downstream 1209 7103448 ~ 7105917 (+) True G1513457
TU1731833 lncRNA downstream 15119 7117358 ~ 7117641 (+) True G1513486
TU1731834 lncRNA downstream 16610 7118849 ~ 7119567 (+) True G1513487
TU1731837 lncRNA downstream 27734 7129973 ~ 7130616 (+) True G1513490
TU1731838 lncRNA downstream 28831 7131070 ~ 7131304 (+) True G1513491
XM_036951549.1 mRNA upstream 73774 6947312 ~ 6958804 (+) False LOC118941079
XM_036951550.1 mRNA upstream 73774 6948585 ~ 6958804 (+) True LOC118941079
XM_036951496.1 mRNA upstream 125109 6863131 ~ 6907469 (+) False LOC110496992
XM_036951497.1 mRNA upstream 125109 6863131 ~ 6907469 (+) True LOC110496992
XM_036951498.1 mRNA upstream 137282 6863131 ~ 6895296 (+) False LOC110496992
XM_036951559.1 mRNA downstream 218254 7320493 ~ 7339446 (+) True LOC110500299
XM_036951562.1 mRNA downstream 279736 7381975 ~ 7406885 (+) False LOC110496985
XM_036951563.1 mRNA downstream 279736 7381975 ~ 7406885 (+) True LOC110496985
XM_036951565.1 mRNA downstream 304687 7406926 ~ 7430025 (+) False LOC110495413
XM_036951567.1 mRNA downstream 305120 7407359 ~ 7430025 (+) False LOC110495413
TU1731792 other upstream 5768 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 322530 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 462099 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 573009 6440852 ~ 6459569 (+) True LOC110496964
TU1731415 other upstream 629664 6402073 ~ 6402914 (+) False LOC110495361
TU1732350 other downstream 324344 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 518057 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 656509 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 692031 7794270 ~ 7801058 (+) True LOC110511355
TU1732572 other downstream 911621 8013860 ~ 8015030 (+) True G1514045

Expression Profile