RNA id: TCONS_00047716


Basic Information

Item Value
RNA id TCONS_00047716
length 1484
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_024047
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19670273 ~ 19680133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACGGGAGAAGCTGTGAAGAAGTGCTGTCCGCGACACAGACCCTTGTTGAAGaagtgaaagaaaacaaaaacatggcATTACTGTCTCTATCATAAGAGGAGCTTGGCCACCTCTCactctctgtgtgtgtctttaaGAAATGGCTCAACCGTCTCAACAGTGGTCTCACAAGGACACAGAGACACTGATCAGATGGCGAATGGCCCACAGCTATTTATTCTCAGGCTGGAGAAACACATGCAGAAATGGCTGGGAGATGTTCATACAAGAGTCAATCCTAAACCTGGATGGAAATATTACTTCTCAAAGAGCAAAACGAAAGTGGGAGAATCTAAAATGCAAATACAAGGTCTTAAAAGCTCTTGCGAAGGATGTGGAAACGGTTAAACCTGAATCCTGGCGATGGTTCAGACTCATGGAAAAGGCTGTTGATGGTGACCCAGGAGACATCGACCCTCCTAAACCCACTTTATTATCTAACCTGGCTGACGAACCCGATTGTGCAGCCCAGCCCAGCAAGAAGATGTATCAGGTGGAAATGGGGAGTGATATTCTCGAATTACTAACACACTCCGTGATCGAAGTCAACACTCAAACAACAGTAGCTGATGTAGGACCCTCGTCAGACACAGCTGAAAGCGTGAAAGAGAAACAAATAGAAAAAAGCCCATCAGAGACTCAAGGCGAGCTACATTTGGAAAGAGCCAAACTCAGAAGAGAGCGACTGTTTCTAGAAAAGGAGCACGCGGACCTGGATCGAGAACGGTTGCTTCTGGAACGCGAAAAATCTGTCGCAGAAAGAGAGAAAACGGCGCTGGAAAGAGACAGAGCGCAGCTGGAAAAGGACAGAGCAGCGGTTGACAGAGAAAGAGCGTTCTTGGAACAGGACAGAGCGAGGCTTGAACGGGACAGGGCGGCTCttgaaagagacagagagacggTCAACGCCATGGTTCTTAGGACAAAGGGCACAGGACACACTGAAACAGACTCGCCATACGCAGAGGACAGAAAaagattaatatttttgtttgaaaaactcATTGAGAGATTTTGAGATCATTCTGATGCACTGAAAGAGGTCAGTGTTGATTATTTGGAGGGTATTTAAGATATTAAAGCACTTAAACAGATGTTCACTTTACACTTAAActgcagttcactcaaaaatgaacactCTATCTTTATTTAACACCCATTTACTAtcccatagtatttatttttccaattaTGCTGTAAATGGGTGGAgagatatttttgtttattgacatattttcatttgtgtttagcagaacatAGACATTGCTGCAGGTTAAAAAGAATTGtacatttttggtgaactgtccctttaagagaaaGCACTTCATGCATAAGTTTCCACTTTAAACGTTTTTGAGGATTCTCACATTTCCTGATGTAGTTCTCGAGTTCATTGTAGTTCACTACAAAGCataattgataataaataatgttcagttta

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-149 No description available

Ensembl:

ensembl_id ENSDART00000073472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047713 lncRNA upstream 113997 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00049225 lncRNA upstream 224761 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 308186 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049223 lncRNA upstream 745882 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047728 lncRNA downstream 57185 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047734 lncRNA downstream 193897 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00049226 lncRNA downstream 310093 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 310104 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00049040 lncRNA downstream 310104 19987079 ~ 19998226 (+) True XLOC_024057
TCONS_00047715 mRNA upstream 2094 19666621 ~ 19668179 (+) True XLOC_024046
TCONS_00047714 mRNA upstream 109012 19557628 ~ 19561261 (+) True XLOC_024045
TCONS_00047711 mRNA upstream 113287 19541019 ~ 19556986 (+) False XLOC_024044
TCONS_00047712 mRNA upstream 113302 19541021 ~ 19556971 (+) False XLOC_024044
TCONS_00047709 mRNA upstream 132950 19523099 ~ 19537323 (+) False XLOC_024043
TCONS_00047718 mRNA downstream 3987 19680962 ~ 19693901 (+) False XLOC_024048
TCONS_00047719 mRNA downstream 4687 19681662 ~ 19693895 (+) True XLOC_024048
TCONS_00047720 mRNA downstream 18677 19695652 ~ 19715136 (+) False XLOC_024049
TCONS_00047721 mRNA downstream 33644 19710619 ~ 19714497 (+) True XLOC_024049
TCONS_00047722 mRNA downstream 41529 19718504 ~ 19731255 (+) False XLOC_024050
TCONS_00047707 other upstream 177653 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 558465 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1181267 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1572412 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1791641 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047732 other downstream 97584 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 915508 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 926921 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2548827 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2910321 22587296 ~ 22594781 (+) False XLOC_024094

Expression Profile

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