RNA id: TU1731799


Basic Information

Item Value
RNA id TU1731799
length 885
RNA type TUCP
GC content 0.56
exon number 8
gene id LOC110513752
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7032578 ~ 7102239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAATATGGCGGCCTGCATCTGATGGCAAATGAAGGATCTGACGCGAATACCTTCTCGAAACTGAGCTCAGCACCGCGTCGGTAGTGGCACATTGACCAGTCTGTGGTCTCCTCACCTGGCACCTGGTGGTACCATCGGTCACAATGGGCCGAACACCTCAGAAAGAACCCTTCAGTTGGGAGGAGTACCTTAAGGAAACGTCATCCACAGCCGCGTCTCCCAGCTGTTTCAGACAGTCCCGTTTCCCTCCCAGTAATGACTTCAAGGCTGGTATGAAGCTGGAAGCCCACGACCCTCGGAACAACACGTCCATCTGCATCGCCACGGTGATGGGTATGATGGGGACACGTCTGCGTCTCCGTCTGGACGGGAGTGACAACACCAACGATTTCTGGAGACTGGTGGACTCCTCAGACATCCAGCCTATAGGGAcctgtgagaggagaggagacatgttaCAGCCACCTCTGGGCTTCAGAATGAACGCCTCCTCGTGGCCTATGTTCCTCCTGAGAACCCTGACTGGAGCAGAGATGGCACCGGCCACAGCTTTTAAAAAGGAACCCTCCAAGCCCTCCCAGAACCTCTTTAAACCTGGGATGAAGCTAGAAGCAGTGGACAAGAAGAACCCCTACCTGATCTGCCCGGCAACCATCGGAGAGGTCAAAGGTGATGAGATCTTTGTGATGTTTGACGGCTGGAGAGGGGCCTTCGACTACTGGTGCCAGTTTGACTCCAGAGACATATTCCCTGTAGGATGGTGTTCTCTGACCAGGCACAGCATCCAGCCTCCTGGCAACTTCTTCACCCTCCCCAAGGCCCTCTTCCTcccagcctcctcctctccccccgccCCCTCCAGACGCTCCATGCAGTCCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731776 lncRNA upstream 24061 7007310 ~ 7008549 (+) True G1513441
TU1731739 lncRNA upstream 90692 6939795 ~ 6941918 (+) True G1513413
TU1731732 lncRNA upstream 105441 6926840 ~ 6927169 (+) True G1513409
TU1731731 lncRNA upstream 108654 6922300 ~ 6923956 (+) True G1513408
TU1731730 lncRNA upstream 112350 6920037 ~ 6920260 (+) True G1513407
TU1731800 lncRNA downstream 182 7085901 ~ 7101269 (+) False LOC110513752
TU1731826 lncRNA downstream 9372 7095091 ~ 7096349 (+) True G1513480
TU1731829 lncRNA downstream 13501 7099220 ~ 7100313 (+) True G1513482
TU1731798 lncRNA downstream 17729 7103448 ~ 7105917 (+) True G1513457
TU1731833 lncRNA downstream 31639 7117358 ~ 7117641 (+) True G1513486
XM_036951549.1 mRNA upstream 73806 6947312 ~ 6958804 (+) False LOC118941079
XM_036951550.1 mRNA upstream 73806 6948585 ~ 6958804 (+) True LOC118941079
XM_036951496.1 mRNA upstream 125141 6863131 ~ 6907469 (+) False LOC110496992
XM_036951497.1 mRNA upstream 125141 6863131 ~ 6907469 (+) True LOC110496992
XM_036951498.1 mRNA upstream 137314 6863131 ~ 6895296 (+) False LOC110496992
XM_036951559.1 mRNA downstream 234774 7320493 ~ 7339446 (+) True LOC110500299
XM_036951562.1 mRNA downstream 296256 7381975 ~ 7406885 (+) False LOC110496985
XM_036951563.1 mRNA downstream 296256 7381975 ~ 7406885 (+) True LOC110496985
XM_036951565.1 mRNA downstream 321207 7406926 ~ 7430025 (+) False LOC110495413
XM_036951567.1 mRNA downstream 321640 7407359 ~ 7430025 (+) False LOC110495413
TU1731792 other upstream 5800 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 322562 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 462131 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 573041 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 629696 6398763 ~ 6402914 (+) False LOC110495361
TU1731797 other downstream 3113 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 340864 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 534577 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 673029 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 708551 7794270 ~ 7801058 (+) True LOC110511355

Expression Profile