RNA id: TU1731797


Basic Information

Item Value
RNA id TU1731797
length 705
RNA type TUCP
GC content 0.59
exon number 4
gene id LOC110513752
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7032578 ~ 7102239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCACGGAGCCTGCGGTCCACACCTGGACAGGAAGCAGTTGCAGCAGCTGCCGGACCACTTTGGGCCAGGTCCGGTCAACACTGTCCTACAGCAGGCTGTTCAGGCATGTGTGGACTGTGCCTACCAACCAACCTTCCTCTTCAGCTTCCTACAGTCCCAGTCCGATGGAGGAGAGATCATCAGAGTGCGGTCTGATGGGGGGATCCACTATGTCAAGCTGCCACAGGCCTCCTCTGCCTCCTTTGTGCTCAGGTTCATGGAGACTCTGTGTCACCAGCTGCAGAGTGACAACCTGTTCTCCTCCCAACCCTTCAGCCCTGCATTCATGGCCTCCACTGGACACACAGCCTACGACAGGAGCACGTCAGTAAAAGAAGAGATGTCAGAGGCCTTGTCCATAGCCAGAGGCTCCGTAGGAAGGAGCAGGCGCTTccagatggacagagacagggactgtAACCTTTAcccttctcccctgtcctcctccaAACGGCTGCACAGCACAGAGGCACACCCCTCGGAAGAGCCCCTTCCTCGCAGTGAGAACGGTTTGACTGAGGACCCTATGgacacctccacctctccctccatgaCCCCTCGCCCCCTGACACAACGCACCACCTCAGAGTACCGTGGCCAGGGGTCCAGCAGCCCCTACTaccctgggtctgggtctggtcaccccccaccaccacccctcagG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731805 lncRNA upstream 47833 7040540 ~ 7040999 (+) True G1513462
TU1731803 lncRNA upstream 50983 7037143 ~ 7037849 (+) False G1513461
TU1731804 lncRNA upstream 51106 7037143 ~ 7037726 (+) True G1513461
TU1731776 lncRNA upstream 80283 7007310 ~ 7008549 (+) True G1513441
TU1731739 lncRNA upstream 146914 6939795 ~ 6941918 (+) True G1513413
TU1731829 lncRNA downstream 2060 7099220 ~ 7100313 (+) True G1513482
TU1731798 lncRNA downstream 6288 7103448 ~ 7105917 (+) True G1513457
TU1731833 lncRNA downstream 20198 7117358 ~ 7117641 (+) True G1513486
TU1731834 lncRNA downstream 21689 7118849 ~ 7119567 (+) True G1513487
TU1731837 lncRNA downstream 32813 7129973 ~ 7130616 (+) True G1513490
XM_036951549.1 mRNA upstream 130028 6947312 ~ 6958804 (+) False LOC118941079
XM_036951550.1 mRNA upstream 130028 6948585 ~ 6958804 (+) True LOC118941079
XM_036951496.1 mRNA upstream 181363 6863131 ~ 6907469 (+) False LOC110496992
XM_036951497.1 mRNA upstream 181363 6863131 ~ 6907469 (+) True LOC110496992
XM_036951498.1 mRNA upstream 193536 6863131 ~ 6895296 (+) False LOC110496992
XM_036951559.1 mRNA downstream 223333 7320493 ~ 7339446 (+) True LOC110500299
XM_036951562.1 mRNA downstream 284815 7381975 ~ 7406885 (+) False LOC110496985
XM_036951563.1 mRNA downstream 284815 7381975 ~ 7406885 (+) True LOC110496985
XM_036951565.1 mRNA downstream 309766 7406926 ~ 7430025 (+) False LOC110495413
XM_036951567.1 mRNA downstream 310199 7407359 ~ 7430025 (+) False LOC110495413
TU1731799 other upstream 3113 7032610 ~ 7085719 (+) False LOC110513752
TU1731792 other upstream 62022 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 378784 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 518353 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 629263 6440852 ~ 6459569 (+) True LOC110496964
TU1732350 other downstream 329423 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 523136 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 661588 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 697110 7794270 ~ 7801058 (+) True LOC110511355
TU1732572 other downstream 916700 8013860 ~ 8015030 (+) True G1514045

Expression Profile