RNA id: XR_005037357.1


Basic Information

Item Value
RNA id XR_005037357.1
length 7758
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110495411
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7514568 ~ 7532080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTTGGTCAGAGTTAGTCACTGCAAGTGCATACAAGTTTCTCTTGACAAAGTGTAGAGTTAATGTTGCAAAAGGTTAGTCTTGTGAGAGAAACAAAATAACAGGGCATGTACCGACAAGATAAGAGGGCGGGCAGAGAATGCTACCTGCAAAATATCGACGTTCTGATTGGCAGATAACAACGTCAATCATTTTGAAGTCCTGTTCGCAGCCAGGAAAGCACTTAGCACAAGTTTTGGTACTCAGCCTAGTGAGCCTTCTACCTGGCCAAGGTCTTGTCCGCGGTCCCTAGCCTACAAAAAACAACGCTGGTGACCGGAGAGGTCGTAACTGTAACTGATCGATGATGGCCTCGCAGAAAGGGACGTTTGCTGGCGTTTTACTTTGTCTCGtcgtGTCCATGACTGTAGCTTTAGAGGTGTCCATCCCTCAGCAGTCCTATGAGTTCGCCAGGGGAGACAACATCACTATACCATGCAGCTTCAAACCCAAGAACCCAATCAACAATCTGGTCGTCATATCCTGGTTGGCTGAAGCAGACAAACCCGGAGAGCCAGAGGTGTCCGTCCTTACCTCCTACTCTACTGGTGACCTGGACATCAGTGACAGGTATGAAGGAAGAGCTTCCCTGGAGCAGGACATAGCTAAAGGAGTAGCCAACCTGAAGCTCTCCTCCATCGGTCTCCAGGACAACCGACTATTCGAGTGTCGGGTCGCCATCCCCAAGGATGACAAGGGTCAGCTGGCTGACACCACCCGTCTGGTGGTCCTGGTGGCTCCCTCTGTGCCTGTCTGTAAGGTCGATGGGAAGGCAGAGTACTTCCAGAACATCAGTCTCACCTGTCAGTCTGAAGAGGGCTCTCCTCTTCCTACCTACAAGTGGCAGGGCTACGACGTCAGAAACATGCCCCGAGCACCTGCACCCAGGACAACAGACAAGGATGGTGTCCTGTCTCTCTTCAACCTCACCATGGAATCCTCAGGATACTACGTCTGTACCTCCACTAATAAGATCCGCAGTGCCAAATGCAACCTGACGCTGTCCGTCATGCCACCGTCTATGGCCCTGGGTTCAACAGCGGGTATCATTGGCGGCGTTGTGGTTGGTGTTCTGGTGCTGCTCATCATCCtcatctactgctgctgctgcaggaaGAAGAAGGACAAAGCAGAGGAGTACGCTATGGGGGTTCCAGAGGGGGAGGAGTTCCACGACGACAAACCCGTGGTGAACGGCGAGGTTCGCCAGACGCGCAGCAAGGAAGGCGACGATGAAGACCACCCACCCAAGATCGTGGACCGCCGCGACCAGTACAAGGAACGCAGCGAGAAGGACTACGATGACCGCCGCAGCGACTACGATGACCGCCTACCCAAGATCGTGGACCGTCGCGACCAGTACAAGGAACGCAGTGAGAAGGACTACGATGACCGCCGCAGCGACTACGATGACCGCCGCAGCGACTACGATGACCGCCGCAGCGACTACGATGACCGCCGCGAGCGCCACGATGACCGCAGGGACCAGGACGACCGCTACTCTGACCGCCGTGACCGGTACGACCGCGATCGTGTTTACGATGAACGCAGTGACGGCGGACGGTACAGTGATCGTTATGATGAGCCCTACGATGATCGGGACAGACCTCCCAGTGTACCGGCCAATAAACCTACTAAGCctttgttactgtaatttaattatgccaTTATTTTTTTCCCATcgtatgaactcatattgttaatcagatataataaaacagagtataagtttacttagttacagttccatttaaaatcatttgttcagtcatttaatcataattttaCCAACAGCCTTCTAAAAATAGAATAGATTAGAGCCACTTAATGTTTCCCACAACTTGTTTTTGGTTGAAAATATAATGAATATTATAAACATAGTAGCTGCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGTCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTGCTAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCATCAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCATCAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTACCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGCTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGTTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGGTCAGGGATCACAAAGGGCCTAGCTACCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTACAGCCTGTAGGTCAGACTTCACAAAGGGCCTAGCTGCCAGGCTGAACTCGGTCACATCAATAACAGGACGACAGTAACACAACGAAGTAAAGCCTGTAGATCAGGGATCATCAAATAGATTCAGCCACCGGATGGTGTTTTTCCTTCAGCAGAAgttcagggggccggaacataattataaatcatttgtagacggcaaattgactgcaagaaacCCAAACGGATGTAATATTTGACAAATATATAATAATTTagaaccttgcttacatttgtaaaCCCTCGCATATATATCGCtcttatgtgtgggaatacttgaactaaatgaaaatcacttggagctgatttcctggtgtttgtaCAGTCTTTTATGTTCAACAATAGCAATTCtacaaaaagtaaaataaaataaaaaaaatgatatataattttctttattttttatgtttttatatatatataattatataatttTGGGGTTGAGAAAAGttgggggggccaaataaaaGGGTCtgtcagttggggaaccctgctagACACCATGCCGACTAGAGGTGGAGCGTATCACTGTTATCTATGTAAAGGCCTTTAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTAGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTATTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTAGAGTATCACTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTATTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTTAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTTAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTATTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTTAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGCCTTTAATGTGGAGTATCACTTATCTATGTAAAGGCCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTGGAGTATCACTGTTATCTATGTAAAGGTCTTCAATGTAGAGTATCACTGTTATCTATGTAAAGGCCTTCAATGTGGAGTACAGCCTATGATTGAAGGAAGGAAGGCCTCAATTCAGTTCAGTAGTCAGGAAGCGAATTGGAATGCTGATTCAAAGATTTGAAAAGTGCCATCTAGTATTTTCaattaggattttttttaaaatgttttattcttGAATCTGAATTTAAATGTCCTTTCTGTTACAAGCTGCCATTGCCTGAATAAGACTGTGTATGAATTTTCAGTGCAGCTCATTGGATAATGCATTTTCCCTCCTGCCTTATTGTCTACTGTTGGTGTGACAGATAATGCATTTACCCTCCTGCCTTATTGTCTACTGTTGGTGTGACAGATAATGCATTTTCCCTCCTGCCTTATTGTCTACTGTTGGTGTGACTGAAGAGCTTTCCACGTCAGTCTCAGGTCTTGGCTGTTTGAGAACCACAAGCTTTTTGGTGACGGTCTGTTTGTTTTTATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTGATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTGATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTGATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGGTAATACCCTCTGATAATACCCTCTAATAGTTACATTTACAAGAGTTACATTTAACATCAACTGTAGATTGGTAATACCCTCTAATATCAACTGTAGATTGATAATACCCTCTAATAAATAAAGTTGTTAACCTTTTTAATAGTTGTTTTCATTACTTAGAAGTGTTGTGTTTTGTCCATGTATTTAACGTCGTGATGCGTGTTAATGCAGTGGAGTGTCAGGTGTCTCAGGTGAGTCTTCATTAACATATTCAAACCATGACTTGTTTTTGGAGTGAGTGAGTCAATCAGGCCTTTTGAAAGAGAACCTAGAGACCCATTTTAAGAACAGAGAGAAACTAGTTTCACTCTGTGGCATGTGCCTAGTCGTTTCACTTCCTCATTATAGCCTGAGGCCAGACAACAGACTCACTTAACTAGAAGTGGCTTCGTTGGGTTCAGACCTATTAAATGGGTCTGTCTGAGTGAGGAGTTTTTATCTAAGGAAGGGAAGATAATCATGCCTTTAATCTTTGACAAAAATGTCTAACCTTTTGTTTTTatgcttttgaaatgtacagggaCAATTTAACTCGTTAAAACATCAAATGTTTGAAGTTTTGGTTAGATGTGATGGTACAATTTATAAACTGTAAATAAAATGTATCATGTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732372 lncRNA upstream 20404 7493955 ~ 7494164 (+) True G1513892
TU1732369 lncRNA upstream 23324 7490621 ~ 7491244 (+) True G1513889
TU1732367 lncRNA upstream 33806 7480409 ~ 7480762 (+) True G1513887
TU1732360 lncRNA upstream 57537 7456247 ~ 7457031 (+) True G1513880
TU1732331 lncRNA upstream 65825 7445791 ~ 7448743 (+) True LOC110495412
TU1732327 lncRNA downstream 44799 7576818 ~ 7581314 (+) True LOC110495403
TU1732398 lncRNA downstream 52347 7584366 ~ 7603443 (+) True G1513914
TU1732413 lncRNA downstream 74466 7606485 ~ 7607479 (+) False G1513921
TU1732411 lncRNA downstream 74662 7606681 ~ 7607479 (+) False G1513921
TU1732414 lncRNA downstream 74662 7606681 ~ 7607479 (+) True G1513921
XM_036951568.1 mRNA upstream 66151 7431822 ~ 7448417 (+) False LOC110495412
XM_036951569.1 mRNA upstream 66151 7431822 ~ 7448417 (+) False LOC110495412
XM_036951571.1 mRNA upstream 66151 7431822 ~ 7448417 (+) False LOC110495412
XM_036951572.1 mRNA upstream 67825 7431822 ~ 7446743 (+) False LOC110495412
XM_036951564.1 mRNA upstream 84543 7407365 ~ 7430025 (+) True LOC110495413
XM_036951581.1 mRNA downstream 2672 7534691 ~ 7576906 (+) False LOC110495403
XM_036951577.1 mRNA downstream 2672 7534691 ~ 7581301 (+) False LOC110495403
XM_036951578.1 mRNA downstream 2672 7534691 ~ 7581301 (+) False LOC110495403
XM_036951576.1 mRNA downstream 2673 7534692 ~ 7581301 (+) False LOC110495403
XM_036951579.1 mRNA downstream 2673 7534692 ~ 7581301 (+) False LOC110495403
TU1732350 other upstream 87597 7426583 ~ 7426971 (+) True G1513874
TU1731797 other upstream 417408 7088832 ~ 7097160 (+) True LOC110513752
TU1731799 other upstream 428849 7032610 ~ 7085719 (+) False LOC110513752
TU1731792 other upstream 487758 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 804520 6708659 ~ 6710048 (+) True LOC110516612
TU1732416 other downstream 88277 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 226729 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 262251 7794270 ~ 7801058 (+) True LOC110511355
TU1732572 other downstream 481841 8013860 ~ 8015030 (+) True G1514045
TU1732800 other downstream 815208 8347227 ~ 8412799 (+) True G1514180

Expression Profile